Transmembrane Segments Prediction
Transmembrane Segments Prediction
| Name | Method, Feature | Author | Site |
|---|---|---|---|
| DAS | Dense Alignment Surface Method | M.Cserzo et al. | Stockholm Univ. (Sweden) |
| MEMSAT | Amino Acid propensity, Dynamic Programming, Topology prediction | D.Johns, W.Taylor &J.Thornton | London Univ. (UK) |
| PHDhtm | Neural Net, Multiple alignment | B.Rost & C.Sander | Columbia Univ.(USA) |
| PHDtopology | Neural Net, Multiple alingment, Amino acid propencity, Topology Prediction | B.Rost & C.Sander | Columbia Univ. (USA) |
| SOSUI | classifies transmembrane segments to several types | S.Mitaku et al. | Tokyo Univ. of Agriculture and Technology (Japan) |
| TMAP(for multiple alignment) for single alignment |
Uses propensity table | B.Persson, P.Argos | EMBL (Germany) |
| TOPPRED2 | Amino acid propencity, Topology prediction | G.von Heijne | Stockholm Univ. (Sweden) |