KEGG   Aureococcus anophagefferens: AURANDRAFT_4392
Entry
AURANDRAFT_4392   CDS       T04134                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
aaf  Aureococcus anophagefferens
Pathway
aaf03013  Nucleocytoplasmic transport
aaf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AURANDRAFT_4392
  09122 Translation
   03013 Nucleocytoplasmic transport
    AURANDRAFT_4392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aaf03019]
    AURANDRAFT_4392
   03041 Spliceosome [BR:aaf03041]
    AURANDRAFT_4392
Messenger RNA biogenesis [BR:aaf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     AURANDRAFT_4392
Spliceosome [BR:aaf03041]
 Complex C
  Other components
   EJC/TREX
    AURANDRAFT_4392
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    AURANDRAFT_4392
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 Cytochrom_D1 IKI3
Other DBs
NCBI-GeneID: 20222040
NCBI-ProteinID: XP_009032840
JGI: Auran1_4392
UniProt: F0XZ39
Position
Unknown
AA seq 300 aa
FKNATTTTLTGHGRNVNSLEWNATGALLASGSDDKTARVWAGEDGYKCAHKLEQHGDSVV
QLCWDPTTPTSLATLAADKAVRLWDLRESTRCVASVKTNHEYINIAWSLCGQHIAVGSSV
GSGSKDADVKDYVSIIDARTHAVVKRLKFAYEVNEFVWAPDARTLLLTTEKGRVEVPRHP
ANIWTMHAHTDDCYCVALDADSTPPKLAVGSKDSIVSLWDLEEMISVRTILRHTTPVRCL
SFSAHGQLVASSAYDPGIDIADAETAELVHTIDAQHAMNSLAWHPTKPVLAYAIDAKSAK
NT seq 900 nt   +upstreamnt  +downstreamnt
ttcaagaacgcgacgacgacgacgctgaccggccacggccgcaacgtcaactcgctcgag
tggaacgcgacgggcgcgctcctcgcctccggctccgacgacaagacggcgcgcgtctgg
gcgggcgaggacggctacaagtgcgcgcacaagctcgagcagcacggcgactccgtcgtc
cagctctgctgggacccgacgacgccgacgtcgctcgcgacgctcgccgcggacaaggcc
gtgcggctctgggatttgcgcgaatcgacgcggtgcgtcgcaagcgtcaaaacgaaccac
gagtacatcaacatcgcgtggtcgctctgcggccagcacatcgccgtgggctcctccgtg
ggctccgggtccaaggacgcggacgtcaaggactacgtgtccatcatcgacgctaggacc
cacgccgtcgtcaagcgcctcaagttcgcctacgaggtcaacgagttcgtctgggcgccc
gacgcgcggacgttattgctgacgacggagaagggccgcgtcgaggtcccgcgccacccg
gcgaacatctggaccatgcacgcgcacacggacgactgctactgcgtcgctttggacgcc
gacagcacgccgccgaagctcgccgtgggctccaaggactccatcgtctcgctctgggat
ttggaggagatgatctccgtgcgcacgatcctccgccacacgacgcccgtccgctgcctc
tcgttctcggcccacggccagctcgtcgcgtcgtcggcctacgacccgggcatcgacatc
gccgacgcggagaccgccgagctcgtccacaccatcgacgcgcagcacgccatgaactcc
ctcgcctggcacccgacgaagcccgtcctcgcctacgccatcgacgccaagtccgccaag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (65)   

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