KEGG - Table of Contents

KEGG2	PATHWAY	BRITE	MODULE	DISEASE	DRUG	KO	GENOME	GENES	LIGAND	DBGET

	Category	Entry Point	Release Info	Search & Compute	DBGET Search


	Systems information	KEGG PATHWAY KEGG BRITE KEGG MODULE KEGG Mapper KEGG Atlas	New maps Update history New hierarchies Update history	Search Pathway Search Brite Search Module KEGG pathway maps BRITE functional hierarchies KEGG modules	PATHWAY BRITE MODULE

		KEGG DISEASE KEGG DRUG KEGG ENVIRON KEGG MEDICUS	New drug maps Update history	Human diseases Infectious diseases ATC drug classification	DISEASE DRUG ENVIRON

	Genomic information	KEGG ORTHOLOGY		KEGG Orthology (KO)	ORTHOLOGY

		KEGG GENES KEGG GENOME KEGG Organisms	New organisms Update history	SSDB search OC viewer† BLAST / FASTA search† KAAS automatic annotation† Map organisms to taxonomy Generate taxonomy tree KEGG organisms	GENES DGENES EGENES† MGENES† GENOME EGENOME† MGENOME†

	Chemical information	KEGG LIGAND KEGG COMPOUND KEGG GLYCAN KEGG REACTION Reaction Modules		SIMCOMP / SUBCOMP search† KCaM search† E-zyme reaction prediction† PathPred pathway prediction† PathComp path computation† PathSearch reaction search†	COMPOUND GLYCAN REACTION RPAIR RCLASS ENZYME

KEGG is developed by Kanehisa Laboratories. See Kanehisa et al. (2012) for the new features of KEGG. † Developed and maintained by Kyoto University Bioinformatics Center as part of its GenomeNet service.

KEGG for specific organisms

KEGG Organisms - the list of currently available organisms

Select (examples) hsa mmu sce eco bsu syn

KEGG Pangenomes - the list of pangenomes defined from KEGG organisms

KEGG mapping for genome comparsion and combination

Enter organism codes:

(examples) hsa eco (genome comparison)
hsa+T30003 (genome and metagenome combination)

Enter category name:

(examples) Vertebrates (category name in KEGG organisms)
Escherichia coli (species name in KEGG pangenomes)

KEGG for software development

KEGG API - REST-style API for accessing KEGG database [document]

KEGG WebLinks - REST-style URLs for accessing KEGG web pages [document]

KGML - XML representation of KEGG pathways [document]

The following resources are developed and maintained by Kyoto University Bioinformatics Center as part of its GenomeNet service.

KEGG database extensions

KEGG MGENES / MGENOME - Metagenome data

KEGG EGENES / EGENOME - EST data

KEGG EXPRESSION - Gene expression data

KEGG OC - Computationally generated ortholog clusters

KEGG as an integrated web resource

DBGET - for keyword search of KEGG and other databases

LinkDB - for searching outside databases linked from KEGG [list of outside databases]

KEGG for computational analysis

BLAST / FASTA - Sequence similarity search

KAAS - KEGG automatic annotation server

GENIES - Gene network prediction

SIMCOMP / SUBCOMP - Chemical structure similarity search

KCaM - Glycan structure similarity search

PathPred / PathComp / PathSearch - Metabolic pathway prediction/computation/search

E-zyme - Enzymatic reaction prediction

Last updated: April 15, 2013

KEGG	GenomeNet	Kanehisa Laboratories