KEGG Encyclopedia

KEGG - Table of Contents

KEGG2	PATHWAY	BRITE	KO	GENES	LIGAND	DISEASE	DRUG	DBGET

	Category	Entry Point	Release Info	Search & Compute	DBGET Search


	Systems information	KEGG PATHWAY KEGG BRITE KEGG Atlas	New maps Map# changes Update status New hierarchies Update status	Search objects in pathways Color objects in pathways Search objects in brite Color objects in brite KEGG pathway maps KEGG pathway modules BRITE functional hierarchies	PATHWAY BRITE MODULE

		KEGG DISEASE KEGG DRUG		Human diseases ATC drug classification	DISEASE DRUG

	Genomic information	KEGG ORTHOLOGY		KEGG Orthology (KO)	ORTHOLOGY

		KEGG GENES KEGG Organisms	New organisms Update status	Map organisms to taxonomy Generate taxonomy tree KEGG organisms SSDB search BLAST search FASTA search KAAS automatic annotation	GENOME GENES DGENES EGENES

	Chemical information	KEGG LIGAND KEGG GLYCAN KEGG PLANT	Update status	SIMCOMP search SUBCOMP search KCaM search E-zyme reaction prediction PathComp computation	COMPOUND GLYCAN REACTION RPAIR ENZYME

See Kanehisa et al. (2010) for the new features of KEGG.

KEGG for specific organisms

KEGG Organisms - the list of currently available organisms

Select (examples) hsa mmu sce eco bsu syn

KEGG as an integrated web resource

DBGET - for keyword search of KEGG and other databases

LinkDB - for searching outside databases linked from KEGG [list of outside databases]

KEGG for computational analysis

BLAST / FASTA - Sequence similarity search

SIMCOMP / SUBCOMP - Chemical structure similarity search

KCaM - Glycan structure similarity search

KAAS - Genome/EST annotation

EXPRESSION - Gene expression data analysis

KEGG for software development

KEGG XML - XML representation of KEGG pathways [document]

KEGG API - SOAP/WSDL interface for the KEGG system [document]

KEGG web links - URLs for linking to the KEGG website [document]

Desktop applications for utilizing KEGG

KegHier - Java application for browsing KEGG BRITE

KegArray - Java application for microarray data analysis

KegDraw - Java application for drawing compound/glycan structures

Last updated: January 1, 2010

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