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FASTA Search

BLAST FASTA KEGG2

Enter query sequence: (in one of the three forms)

Sequence ID (Example) mja:MJ_1041
Local file name
Sequence data

Select program and database:

FASTA (prot query vs prot db)
KEGG GENES
      Eukaryotes  Prokaryotes  Viruses
      Favorite organism code or category
   
KEGG MGENES
      Environmental Organismal
      Favorite samples
   
Microbial Reference Genes
      Ocean (OM-RGC) Human gut (IGC)
nr-aa (GenBank, UniProt, RefSeq and PDBSTR)
     Swiss-Prot UniProt RefSeq
     PDBSTR
UniRef50 UniRef90 UniRef100
Virus-Host DB
FASTA (nucl query vs nucl db)
TFASTX (prot query vs nucl db)
KEGG GENES
      Eukaryotes  Prokaryotes  Viruses
      Favorite organism code or category
   
KEGG MGENES
      Environmental Organismal
      Favorite samples
   
KEGG GENOME
     Favorite organism code or category
 
Microbial Reference Genes
      Ocean (OM-RGC) Human gut (IGC)
      Ocean (MATOU)
nr-nt (GenBank, EMBL and RefSeq)
     dbEST dbGSS HTGs dbSTS
     RefSeq
Ribosomal Databases
     SILVA (SSU, 16S/18S) SILVA (LSU, 23S/28S)
     PR2 (Protist Reference)
     RDP (Prokaryotic 16S) RDP (Fungal 28S)
EPD
Virus-Host DB Genes
     Genomes
Environmental Viral Genome
     


Output options:

Set the maximum number of database sequences to be reported:
Set the maximum number of alignments to be displayed:
Optional parameters: (see manual for details)

ktup: (default 2 for protein sequence)
E-value threshold
Scoring matrix: (except for nucl query)
Additional options:
(delimited by whitespaces)
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