KEGG   Paenarthrobacter aurescens: AAur_1434
Entry
AAur_1434         CDS       T00447                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
aau  Paenarthrobacter aurescens
Pathway
aau03030  DNA replication
aau03410  Base excision repair
aau03420  Nucleotide excision repair
aau03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AAur_1434 (ligA)
   03410 Base excision repair
    AAur_1434 (ligA)
   03420 Nucleotide excision repair
    AAur_1434 (ligA)
   03430 Mismatch repair
    AAur_1434 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aau03032]
    AAur_1434 (ligA)
   03400 DNA repair and recombination proteins [BR:aau03400]
    AAur_1434 (ligA)
Enzymes [BR:aau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AAur_1434 (ligA)
DNA replication proteins [BR:aau03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AAur_1434 (ligA)
DNA repair and recombination proteins [BR:aau03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AAur_1434 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AAur_1434 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AAur_1434 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AAur_1434 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH BRCT_2
Other DBs
NCBI-ProteinID: ABM07125
UniProt: A1R4P6
Position
1570044..1572350
AA seq 768 aa
MSTPENPDPVDTTTQDAAAAIVAEEGTPPSESLRDEYEQLADLVRKYRYAYYQEDSPTVS
DAEFDELYRRLEELEALHPELVSNDSPTQEVGGEVSSAFAAVEHLQRMYSLDDVFSLDEL
EAWVRKAEASVAKLGDSVPPIAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITH
NVLTIKEIPRQLSGSGYPSEVEIRGEVFIPSKAFLEFNESLVAAGKAPLANPRNAAAGSL
RQKDPAETAKRPLSMFVHGIGAREGLDAKSQSESYKLLEEWGLPVSPYLKVLETFDDVLK
FIADYGERRHKLVHEIDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIA
VNVGRTGRVTPFGLMEPVKVAGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIV
GPVLALRDKQEPPVREFVMPTECPSCGTPLAPAKESDVDIRCPNAKSCPSQLRERVFHVA
SRGAFDIEALGWEAAVALTQPAEPETPPLTSEARLFSLTREDLADVLIRREKRSKGVGTG
EYELVPYFYTKGTAKSPSKPTATTEKLFAELEKAKQQPLWRVLVALSIRHVGPTASRALA
TAFGSMDAIRNATEEQMAHVDGVGPTIAVALKEWFAVDWHNEIVDSWAAAGVRMEDERDA
SVPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKA
EQLGVPVLDEDGFRELLANGPAQTGTEAEAATDEATVVDETAAEAATE
NT seq 2307 nt   +upstreamnt  +downstreamnt
gtgagcacaccagagaatccggatccggtcgacaccacaacccaggacgccgctgcggcc
atcgtcgcagaggaggggactccgccgtcggagtccctgcgggatgagtacgagcaactg
gcggaccttgtccgcaagtatcggtatgcctattaccaggaagactcgccgacagtctcc
gacgccgagtttgatgaactgtaccgccggctggaggaactggaagcactccacccggag
ctcgtgtccaacgactcgcccactcaggaggttggtggcgaggtctcatctgcctttgcg
gcggtggagcatctgcaacggatgtacagccttgacgacgtcttctccttggatgagctc
gaagcctgggtccgcaaagctgaagcgtcagtggcgaagctcggcgattccgtcccgccc
atcgcgtggctgactgaactgaaaatcgatggccttgccgtcaatctgctgtacagggac
gggaaactggtccgtgccgcaacccgaggcgacggcaccaccggtgaagacatcacccac
aacgttctcaccatcaaggaaatcccacggcagctcagtggttccggctacccatcggaa
gtggagatccgcggcgaggtgttcatcccttccaaggcattccttgagttcaatgagtcc
ttggtggctgccggcaaggcaccgcttgccaacccgcgcaacgccgccgctggttcgctt
cgccagaaggatcccgcggaaacggccaagcggcccctcagcatgtttgtccatggcatc
ggtgcccgtgaaggcttggatgcgaagagccaatcggaaagctacaagctcctcgaggaa
tgggggctccctgtcagcccatacctcaaggtgctggagaccttcgacgacgtcctgaag
ttcattgccgactacggtgagcgcaggcataagctcgtgcacgagattgacggcattgtg
gtcaagattgatgattttgccactcaacgcgcacttgggtacacgtcccgcgtgcccaga
tgggctgccgcgtacaagtacccgcccgaggaagtccacacgaagctcctggacatcgcc
gtcaacgtgggccgcaccggtcgcgtgactccctttggcctgatggaacccgtgaaggtg
gccggctccacggtgggcatggctacgctgcacaaccaggacgtggtcaaggccaagggc
gtgatgatcggcgacatcgtgattctccgcaaagcaggcgatgtcatccccgagatcgtc
ggacccgtccttgccttgcgtgacaagcaggaaccgcccgtccgtgaattcgtgatgccc
acagaatgcccgtcctgtggcacgccgctggctccggccaaggaaagcgacgtggacatt
cgttgccccaacgccaagtcctgcccctcgcagctgcgggagcgcgtgttccacgtggcc
agcaggggtgctttcgacatcgaagcacttggctgggaagcggctgtggcactgacccaa
cccgcagagccggagacgccgccgctcaccagtgaggcccgcctgttcagcctgacgcgg
gaagatctggcggatgtcctgatccgcagggaaaagcgctccaagggtgtgggcacggga
gagtatgaactcgttccgtatttctataccaagggaacggcgaagtctccgtccaaaccg
accgccaccacggaaaaactgttcgctgagctggagaaagccaagcagcagccactgtgg
cgagtgctggtggcgctgtccatccggcacgttggaccaacagcctcccgcgcacttgcc
accgctttcgggagcatggacgccatccgcaacgccaccgaagagcaaatggcccatgtt
gacggagttggacccaccatcgccgtggcgctcaaggaatggttcgcagtggactggcac
aacgagatcgtggacagctgggccgctgccggcgtgcgaatggaggacgagcgggatgct
tcggtaccgcggacccttgagggcctcacagtggtagtcacgggcacgttgcccaacttc
agccgcgacgaagccaaggaggccatcatcatccgtggcggcaaggcgtccggttccgtc
tccaagaacaccagttacctggtggccggtgaaagcgcgggcaccaagctggacaaggct
gagcaactgggcgtaccagtgctggacgaggacggcttccgcgagctcctggccaacgga
ccggcacagaccgggacggaagctgaagccgcaacggatgaagctaccgtagtggatgaa
acagcagcggaagcagccaccgaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (54)   

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