KEGG   Luteitalea pratensis: LuPra_04247
Entry
LuPra_04247       CDS       T04394                                 
Symbol
rnr_2
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
abac  Luteitalea pratensis
Pathway
abac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:abac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LuPra_04247 (rnr_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abac03019]
    LuPra_04247 (rnr_2)
   03016 Transfer RNA biogenesis [BR:abac03016]
    LuPra_04247 (rnr_2)
Enzymes [BR:abac01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LuPra_04247 (rnr_2)
Messenger RNA biogenesis [BR:abac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LuPra_04247 (rnr_2)
Transfer RNA biogenesis [BR:abac03016]
 Prokaryotic type
  tRNA degradation factors
   LuPra_04247 (rnr_2)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AMY11003
UniProt: A0A143PS59
Position
complement(5054315..5056579)
AA seq 754 aa
MTPDDLLHRIRERVTHPSTVKELMRALKLQKSEAPGVRRALKALVDRGALIETRGRHFGV
PELMDLAPGRITVHPNGFGFVKLDHPIDEVTADIYVAGHNLHDAMHGDRVLVRVERHGRD
GRSEGRIVRILERGAATTVGRFDKEDHGLLYVTPFDKRLLIDVQIPAGDDVGATPGQMVV
IEITRWPVHGRGALGRVIEIIGDLEAPGVDTRIIIRKHGIPDRHSDESIAEARRLGVEID
PKDIEGRTDFRNDVVVTIDGETARDFDDAVSVERLEHGHYLLKVHIADVAHYVHEGSALD
REAAERSTSVYFPERAVHMFPEELATGLCSLRPHVDRLVQSCVMEIDGKGRVVDATMHDG
VIVSRSRMTYTEVHAILAGDAALRETYRELVPHFERMGELFEILNQRRHRRGSIDFDLPE
AKIVLDAEGQIENILMAERNIAHRLIEEFMLVANETVAAFLEANGVPTLYRIHEAPDLLK
VEQFEEFISTLGYTLAAPMSAVKPRHFQKLVEKLRGKPEERPIATLMLRTMQKARYDTSC
LGHFGLAADAYAHFTSPIRRYPDLIVHRTLREFRHGKLTDALYEERVEELPELGRHTSEM
ERRADEAENELVAWKKVRFMADKVGEEYGGFITGVAPFGLFVQLVEHYVEGLVHISSLAD
DYYRYLERVHQLRGENTHRVFRLGDPIRVQVIRVDQDRRQVDLGVVEVLDRIRESERNRG
PRTSKAGSRGKAAAGKGRPGKRERAIKKATNSRK
NT seq 2265 nt   +upstreamnt  +downstreamnt
atgacaccagacgacctgttgcaccgcatccgcgagcgcgtgacccacccttcgaccgtg
aaggagttgatgcgggcgctgaagctccagaagtcggaggctcccggcgtccggcgcgcg
ctcaaagcgttggtcgaccgcggtgcgctgattgaaacacgcggccggcatttcggcgtt
cccgagctgatggacctggcgccggggcgcatcacggtgcaccccaacggcttcggtttc
gtgaagctcgatcacccgatcgacgaggtcaccgcggacatctacgtcgcagggcacaac
ctgcacgacgcgatgcacggcgaccgtgtcctcgtgcgcgtggagcggcatggccgtgac
gggcgctccgaaggccgcatcgtccgcatcctcgagcgcggggccgcgaccaccgtcggc
cggttcgacaaggaagaccacgggctgctctacgtcacgccgttcgacaagcggctgctg
atcgacgtgcagatccccgctggtgacgatgtaggagcgacaccaggccagatggtggtg
atcgagatcacccggtggcccgtgcacggacgtggagcgctcgggcgcgtgatcgagatc
atcggcgacctcgaggcgccaggcgtcgacacccggatcatcatccgcaagcacggtatt
ccggaccgccattccgacgagagcatcgccgaagcccggcggctgggtgtcgagatcgac
ccgaaggacatcgagggccgcaccgacttccgcaacgacgtcgtcgtcaccatcgacggc
gagacggcccgcgacttcgacgacgcggtgtcggtggagcggctggagcatggccactac
ctgctgaaggtgcacatcgcggacgtggcgcactacgtccacgagggcagcgcgctggac
cgggaggcggccgagcgcagcacgtcggtctatttccccgagcgcgccgtgcacatgttc
ccggaggaactcgccaccggcctgtgctcgctgcggccgcacgtcgatcgcctggtgcag
tcgtgcgtcatggagatcgacggcaagggacgcgtcgtcgacgccacgatgcacgacggc
gtgatcgtcagtcgttcgcgcatgacctacaccgaggttcacgcgatcctggccggcgat
gccgcgctgcgcgagacctaccgcgaactcgtgccgcacttcgagcgcatgggcgagctg
ttcgagatcctgaaccagcggcggcaccggcgtggatcgatcgacttcgacctcccggaa
gccaagatcgtgctcgacgctgaaggccagatcgagaacatcctgatggccgagcgcaac
atcgcgcaccggttgatcgaggagttcatgctcgtcgccaacgagaccgtcgcggccttt
ctcgaggccaatggcgtgccgacgttgtatcgcatccacgaggctcccgacctgctcaag
gtggagcagttcgaggagttcatcagcacgctcgggtacacgctggcggcccccatgagc
gcggtgaagccgcgccatttccagaagctggtggagaagttgcgcggcaagccggaggaa
cggccgattgcgacgctgatgctgcggacgatgcagaaggcgcgctacgacacgtcgtgc
ctcggccacttcggcctggccgccgacgcctacgcacacttcacctcaccgatccgccgc
tacccggacctgatcgtccatcggaccctccgtgagttccgccacggcaagctcaccgac
gcgttgtacgaggagcgggtcgaggagttgccggagctcgggcgacacacgtcggagatg
gagcggcgcgcggacgaggccgagaacgagctcgtcgcgtggaagaaggtccgattcatg
gccgacaaggtcggcgaggagtacggaggcttcatcaccggcgtcgcgccctttggcttg
ttcgtgcagttggtggagcactacgtggaggggctcgtccacatctcgagcctcgccgac
gactactaccggtacctcgaacgcgtgcatcaactgcgcggcgagaacacgcatcgcgtc
ttccggctcggcgatcccatccgcgtgcaggtgatccgcgtcgatcaggaccgccggcag
gtcgacctgggcgtggtcgaggtcctcgatcgcatccgcgagtcggaacgcaatcgcggg
ccgcgcaccagcaaggccggttcgcgcggcaaggccgcggcgggcaagggccggccgggc
aagcgcgaacgggcgatcaagaaggcgaccaacagccgcaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (78)   
   KEGG ORTHOLOGY (1)   
   RefGene (75)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (92)   

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