KEGG   Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT131111
Entry
AGABI1DRAFT131111 CDS       T03136                                 
Symbol
AGABI1DRAFT_131111
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
abp  Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018  RNA degradation
abp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:abp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AGABI1DRAFT131111 (AGABI1DRAFT_131111)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AGABI1DRAFT131111 (AGABI1DRAFT_131111)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abp03019]
    AGABI1DRAFT131111 (AGABI1DRAFT_131111)
   03041 Spliceosome [BR:abp03041]
    AGABI1DRAFT131111 (AGABI1DRAFT_131111)
Messenger RNA biogenesis [BR:abp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AGABI1DRAFT131111 (AGABI1DRAFT_131111)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     AGABI1DRAFT131111 (AGABI1DRAFT_131111)
Spliceosome [BR:abp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    AGABI1DRAFT131111 (AGABI1DRAFT_131111)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 18827377
NCBI-ProteinID: XP_007332731
JGI: Agabi_varbur_1_131111
UniProt: K5VPZ8
Position
Unknown
AA seq 130 aa
MADRNRPSVRGIIRGVPLHRPRGGPPPSSGLAAQDNKPKREAILDLAKYVNEPIRVKFMG
GREVVGTLKGYDQLLNLVLDDVQEQIQGNPTSFSLFILIQPDIHPQNQNPAPALSASSSF
EGPSSPSSVL
NT seq 393 nt   +upstreamnt  +downstreamnt
atggctgatcgcaatcgcccctctgtccgtggcatcatccgcggtgtgcccctccacaga
ccccgcggtggcccacccccgtcgtcgggcctcgctgcccaggacaacaagcccaagcgc
gaggccattctcgatctcgcaaaatacgtcaacgagcccatccgcgtcaagttcatgggc
ggacgcgaagtcgtaggcaccctcaaaggctacgatcagctattaaaccttgtactcgac
gatgtccaagaacaaatccaaggcaacccaacatccttttctttatttattcttattcaa
cctgacatccatccacagaaccagaaccccgcacccgctctctcggcctcgtcgtccttc
gagggcccctcatcaccatcgtcagtcctgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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