KEGG   Aliarcobacter butzleri RM4018: Abu_0052
Entry
Abu_0052          CDS       T00600                                 
Name
(GenBank) conserved hypothetical protein, predicted hydrolase of the metallo-beta-lactamase superfamily
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
abu  Aliarcobacter butzleri RM4018
Pathway
abu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:abu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Abu_0052
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abu03019]
    Abu_0052
Messenger RNA biogenesis [BR:abu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Abu_0052
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_6 MupG_C
Other DBs
NCBI-ProteinID: ABV66337
UniProt: A8EQW3
Position
complement(63026..64948)
AA seq 640 aa
MEEINKEEFTVVIKNENSSNVEEETTKKPPFKKRKPKPKVPRDNSTNSNNNQKSGEGWVT
DLKKAYLINEKIHKDRLNPHYKLNLNTSAKLKITPLGGLNEIGGNMMVVETENEAIIVDV
GMSFPDGEMHGVDILIPDFTYIREIKDKIVAVIITHGHEDHIGAMPYLFKEMQFPIYGTS
LPLEMIGSKFDEHKMREHRGYFRAISKRTPIKIGNDFEVEWMHITHSIIDSSAVAIKTEA
GTMIHTGDFKIDHTPIDGFPTDLHRLAHYGEEGVLVLTSDSTNSHSPGFTRTEKTVGPTF
DKIFSSAKGRVVMSTFSSNIHRVAQAIEKALIYGRKICVIGRSMEKNLEIAMNLGYIKFP
KDQFIEAHEVNKYNDKEVLIVTTGSQGESMSALYRMAIHEHRHIKIKPEDQIILSSKAIP
GNEASVSEIINHLLKAGAKVAYQDFPDIHVSGHAGQEEQKLMLRLIKPKFFLPVHGEYNH
ALKHGQTGVDCGVLERNVYIMSDGEQIEVTPKYLKKVKTVKSGKVYIDNQLNHRISDDVV
LDRQTMAKEGIVMIVAQINENDRTLAQKPKVSSFGLVSDKQDKYFVKEIEDILGVFLENV
KPGILKNNRILEDELRKVVRKHCTRKYKKYPMIVPTIFVQ
NT seq 1923 nt   +upstreamnt  +downstreamnt
atggaagaaataaataaagaagaattcacagttgttataaaaaatgaaaatagttcaaat
gtagaagaggaaactacaaaaaaacctccttttaaaaaaagaaaaccaaaaccaaaagtt
ccaagagataattctactaattcaaataataatcaaaaaagcggtgaaggttgggtaact
gatcttaaaaaagcatatttaataaatgaaaaaattcataaagatagattaaatcctcac
tataaattaaatctaaatacaagtgccaaattaaaaatcactcctcttggtggattaaat
gaaattggtggaaatatgatggttgttgaaactgaaaatgaggcaatcattgtagatgtt
ggtatgagttttccagatggtgaaatgcatggagttgatattttaattcctgattttact
tacattagagaaataaaagacaaaattgttgcagttattattactcatggtcatgaagat
catattggtgcaatgccatatttatttaaagagatgcaatttcctatttatggaacatca
ctacctcttgaaatgattggttcaaaatttgatgaacataaaatgagagaacacagagga
tactttagagcaatttcaaaaagaactccaataaaaataggaaatgattttgaagtagag
tggatgcatataactcactcaattattgattcatcagcagttgctattaaaacagaagct
ggaacaatgattcatacaggagattttaaaattgatcatactccaatagatggatttcct
acagatttacatagacttgctcattatggagaagagggtgttttagttttaacttctgat
tcaacaaactctcattcacctggttttacaagaacagaaaaaactgttggaccaactttt
gataaaatattttctagtgcaaaaggtagagttgtaatgtcaactttctcttcaaatatt
cacagagttgcacaagctattgaaaaagcactaatttatggaagaaaaatttgtgtgatt
ggaagatcaatggagaaaaacctagaaattgctatgaatttaggttatataaaatttcca
aaagaccaatttatagaagctcacgaagtaaataaatataatgataaagaagttttaatc
gtgacaactggtagtcaaggtgaatcaatgagtgctttatatagaatggcaattcatgaa
catagacatattaaaattaaacccgaagatcaaattatactttcatctaaagcaattcca
ggaaatgaagcaagtgtttctgaaattataaatcacttattaaaagctggtgcaaaagtt
gcttatcaagatttcccagatattcacgtttcaggacatgcaggacaagaagaacaaaaa
cttatgctaagacttattaaaccaaaattctttttaccagttcatggtgaatataatcat
gctttaaaacatggtcaaactggagttgattgtggtgtattagaaagaaatgtttatatt
atgagtgatggtgaacaaatcgaagttactccaaaatatcttaaaaaagtaaaaacagtt
aaatctggaaaagtttatatagataatcaattaaatcatagaatttctgatgatgtagtt
ttagatagacaaactatggctaaagaaggtatagttatgattgtagctcaaattaatgaa
aatgatagaacattagctcaaaaaccaaaagtttcatcatttggattagtttctgataaa
caagataaatattttgtaaaagagattgaagatattttaggtgttttcttagaaaatgtt
aaacctggtattctaaaaaataatagaattttagaagatgaattaagaaaagttgtaaga
aaacattgtactagaaaatataaaaaatatccgatgattgttcctactatatttgtacaa
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (39)   

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