KEGG   Anolis carolinensis (green anole): 100558864
Entry
100558864         CDS       T01608                                 
Symbol
thoc1
Name
(RefSeq) THO complex 1
  KO
K12878  THO complex subunit 1
Organism
acs  Anolis carolinensis (green anole)
Pathway
acs03013  Nucleocytoplasmic transport
acs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100558864 (thoc1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100558864 (thoc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acs03019]
    100558864 (thoc1)
   03041 Spliceosome [BR:acs03041]
    100558864 (thoc1)
Messenger RNA biogenesis [BR:acs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100558864 (thoc1)
Spliceosome [BR:acs03041]
 Complex C
  Other components
   EJC/TREX
    100558864 (thoc1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100558864 (thoc1)
SSDB
Motif
Pfam: efThoc1 Death
Other DBs
NCBI-GeneID: 100558864
NCBI-ProteinID: XP_003219703
Ensembl: ENSACAG00000008307
UniProt: G1KHP8
Position
4:complement(39318518..39340889)
AA seq 674 aa
MTSPDGAVVLSGDSTMSPSPPLLFSLPEARLRFMNSTQDALKSKNIKPLLNAFTQIPGSE
NEKKFTLDQAFRVAVEEEIINKAPCENVLAIISLVINGVTEGICTASTPFVLLGDVLDCL
PLDQCDKIFTFVEKNVTTWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLA
RLFPLSEKSGLNLQSQFNLENITVFNTIEQESTLGQKHVEDREEGMEVEEGEMGDDEAPT
SSSIPIDYNLYRKFWSLQDYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRK
KLEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYV
LTDEQSLWIEDTTKLVYQLLSENPPDGERFAKMVEHILNTEENWNSWKNEGCPSFVKERA
GESKAIRPFVRKRPPPEDFLGKGPSKKILMGNEELTRLWNLCPDNMEACKSESREYMPTL
EEFFEEAIEQADPENMVDKEFKVVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLE
NMVIKLAKELPPPSEEIKTGEEDEEDNDALLKENNESPDVQRDKLVTGEQIEQFAYNLGE
YWKVLAPCLEMKESDIRQIESDSEDVKMRAKQLLVTWQDQEGIHATMENLITAVNKAGLN
ELAESLTNDSENNG
NT seq 2025 nt   +upstreamnt  +downstreamnt
atgacatcaccagacggcgccgtagttctgtcaggagattcgaccatgtctccgtcgccg
ccgctgctcttcagcttgcctgaggctcggcttcgtttcatgaactctacacaagatgct
ctcaagagcaaaaacattaaacctttactcaatgctttcactcagatacctggaagtgaa
aatgaaaaaaagtttaccttggaccaagctttcagagttgccgtagaagaagaaattata
aataaagctccctgtgaaaatgtcttggccatcatctcccttgttattaatggggtcaca
gaaggtatctgtacagcatcaactccttttgtactccttggagatgtcctggattgcctt
cctttggatcaatgtgacaaaattttcaccttcgtggaaaaaaatgtaaccacatggaaa
tcgaacacattttactcagcaggaaagaattatttgttgagaatgtgcaatgatcttttg
agaagattatctaaatcccaaaatacagtgttttgtggaagaattcaactattcttagct
agattattcccactttcagaaaaatcagggcttaacttgcaaagccaatttaatctggaa
aatataactgttttcaatactattgaacaagaaagcacccttggacagaagcatgtagag
gacagagaagaaggaatggaagtagaagaaggggaaatgggagatgatgaagcccctact
agtagttccattccaatagattacaatctgtacagaaagttctggtcacttcaagactat
tttaggaatcctgtgcaatgttatgaaaaagtttcatggaaaacatttcttaagtactct
gaagaggtgttggctgtttttaaaagctacaaattagatgacacacaagcttcaagaaag
aaattagaggagctaaaaacaggaggagaacatgtttactttgctaaattcctcacaagt
gaaaagttaatggatttacagctgagtgacagcaactttcgccgccacatcctattgcaa
tatttaatattatttcagtatcttaagggacaagtgaaatttaaaagttcaaactatgtt
ctaactgatgaacaatcactgtggattgaagatactaccaaactggtctaccagcttctt
tcagaaaaccccccggatggagagagatttgcaaaaatggtggagcacatattaaacaca
gaagaaaactggaattcatggaaaaatgaaggttgtccaagttttgtgaaagaaagggca
ggcgaatctaaggcaataagaccttttgtgcggaagagaccccctcctgaagacttcctg
ggaaaaggccccagcaaaaaaattctcatggggaatgaagaattgactcggctctggaat
ttatgccctgataacatggaagcttgtaaatctgagagccgagagtatatgcctacgctg
gaagagttctttgaagaagctattgaacaggcagatcctgaaaatatggtggataaagaa
tttaaagttgtgaataattctaactatggctggagagcattaaggctcttggcgcgcagg
agtcctcacttcttccagccaaccaaccagcagtttaaaagtttaccagaatatcttgaa
aacatggtcatcaaattagctaaagaactacctcctccttctgaagaaattaaaacaggc
gaagaagatgaggaagataatgatgctttgttaaaggaaaacaatgaaagtccggatgtt
caacgggacaaacttgtaacaggggaacagatagagcagtttgcttataaccttggagaa
tactggaaagttctggctccatgcttggaaatgaaagagtctgatataaggcagattgaa
tcagatagtgaagatgtgaagatgagagctaagcagctccttgttacttggcaagatcaa
gaggggatccatgcaactatggaaaatctgattactgcagtgaacaaagctgggttaaat
gaacttgctgaaagcctaacgaatgacagtgaaaacaatggataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (45)   

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