KEGG   Anaeromyxobacter dehalogenans 2CP-C: Adeh_0784
Entry
Adeh_0784         CDS       T00326                                 
Name
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ade  Anaeromyxobacter dehalogenans 2CP-C
Pathway
ade03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ade00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Adeh_0784
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ade03400]
    Adeh_0784
Enzymes [BR:ade01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Adeh_0784
DNA repair and recombination proteins [BR:ade03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Adeh_0784
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ABC80559
UniProt: Q2IP30
Position
complement(904718..906694)
AA seq 658 aa
MARAPVPTYRAQLATLVAAPPAGAGWVHETKYDGYRIGCALEGGRATLWSRRGNDWTAQF
PEVARAAEALPVRSALLDGEVAAVLPGGRTSFQALQQAFSGGRRSLAYFVFDLLWLDGED
LSRRPLLERKDALRRLLGARREVLRYAPHVDAPGAEVLREACRLGLEGIVSKRADAPYRP
GRNTTWTKAKCLARQELVIGGFTDPEGSRQGIGALLVGFHEGGALRFAGKVGTGFTQASA
RALRARLDRLERTDPPFTPRPPGALGRIAHWVRPELVAEVAFAEWTDDGKVRHPSFQGLR
EDKRAADVVRERPGAGAPPPAAASPPPQAPGAGGPARRRRPAGGPGEVVIGGVRLSHPER
LVFPGEGRTGLTKADVARYYDAVAGAMLPHLRGRPLTLFHCPQGLSGECRFMKHSKTWAP
PAVRRVRIQEKTKLGEYLIADDRAALLSLVQLDVLELHTWNATADALETPDRIVLDLDPG
PAVPWPEVVRAARLLRSALEALGLAAFVKTTGGAGLHVVTPLVPRRRWEDCLAFARGLAA
TVARHEPRAFTVAFARAGRERKILLDYLRNNRTNTSVAAFSLRARPGAPASVPVAWDELG
PRLRPERLGARTVPRRLARLGADPWAGYARAARPLADAHLAAVGAAPAAAPARGGGRR
NT seq 1977 nt   +upstreamnt  +downstreamnt
gtggcccgcgcgcccgtcccgacctaccgcgcccagctcgcgaccctcgtcgcggccccg
ccggccggcgcgggctgggtgcacgagacgaagtacgacgggtatcgcatcggctgcgcg
ctcgagggcgggcgcgccacgctgtggagcaggcgcggcaacgactggaccgcgcagttc
ccggaggtggcgcgcgccgccgaggcgctcccagtgcggagcgcgctgctcgacggcgag
gtcgccgcggtgctgcccggcggccggaccagcttccaggcgctccagcaggcgttctcc
ggcgggcgccgctcgctcgcctacttcgtgttcgacctgctctggctcgacggcgaggac
ctctcccggcgcccgctgctcgagcgcaaggacgcgctgcgccggctgctcggcgcgcgc
cgcgaggtgctccgctacgcgccgcacgtggacgcgcccggcgccgaggtgctccgcgag
gcgtgccgcctcggcctggaggggatcgtctcgaagcgcgccgacgcgccgtaccggccc
gggcggaacaccacctggacgaaggcgaagtgcctcgcccgccaggagctggtgatcggc
ggcttcaccgatcccgagggcagccgccagggcatcggggcgctgctggtgggcttccac
gagggcggcgcgctgcgcttcgccgggaaggtcggcaccggcttcacgcaggcgtcggcg
cgggcgctgcgcgcgcgcctggatcgcctggagcgcaccgacccgcccttcacgccacgc
ccgcccggcgcgctcggccggatcgcgcactgggtccggccggagctggtcgccgaggtg
gcgttcgccgagtggaccgacgacgggaaggtgcgccacccgtcgttccaggggctgcgc
gaggacaagcgcgcggcggacgtcgtccgcgagcgccccggcgccggcgcgccgccgccc
gcggccgcctccccgccgccgcaggcgcccggcgccggcggccccgcgcggcggcgccgc
ccggcgggcggaccgggcgaggtggtgatcggcggcgtccgcctctcgcacccggagcgc
ctggtgttcccgggcgaggggcggaccgggctcaccaaggcggacgtggcccggtactac
gacgcggtggccggcgcgatgctgccgcacctgcgcggccggccgctcaccctgttccac
tgcccgcagggcctctccggcgagtgccgcttcatgaagcactcgaagacctgggcgccg
cccgcggtgcggcgcgttcgcatccaggagaagacgaagctgggcgagtacctgatcgcc
gacgaccgcgcggcgctgctctcgctcgtgcagctggacgtcctcgagctgcacacctgg
aacgcgaccgcggacgcgctggagacgccggaccggatcgtgctcgacctcgacccgggg
ccggcggtcccctggccggaggtggtgcgcgcggcgcggctgctgcgctcggcgctggag
gcgctggggctcgccgcgttcgtgaagaccaccggcggcgccgggctgcacgtggtgacc
ccgctcgtgccccgccggcgctgggaggactgcctcgcgttcgcgcggggcctcgccgcc
acggtggcgcgccacgagccgcgcgcgttcacggtggcgttcgcgcgcgcggggcgcgag
cggaagatcctgctcgactacctgcggaacaaccggaccaacacctcggtggcggcgttc
tcgctccgggcgcggccgggcgcgccggcgtcggtgccggtggcctgggacgagctgggg
ccgcggctgcggccggagcggctgggggcgcggacggtcccgcggcggctggcgcggctc
ggcgccgacccgtgggccgggtacgcgcgcgccgcccggccgctcgccgacgcccacctg
gccgcggtgggcgccgcgccggcggccgcgccggcgcgcggcggggggcggcggtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (44)   

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