KEGG   Auricularia subglabra: AURDEDRAFT_111514
Entry
AURDEDRAFT_111514 CDS       T03129                                 
Name
(GenBank) DNA-dependent RNA polymerase II second largest subunit
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
adl  Auricularia subglabra
Pathway
adl03020  RNA polymerase
adl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:adl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AURDEDRAFT_111514
  09124 Replication and repair
   03420 Nucleotide excision repair
    AURDEDRAFT_111514
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:adl03021]
    AURDEDRAFT_111514
   03400 DNA repair and recombination proteins [BR:adl03400]
    AURDEDRAFT_111514
Enzymes [BR:adl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AURDEDRAFT_111514
Transcription machinery [BR:adl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     AURDEDRAFT_111514
DNA repair and recombination proteins [BR:adl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      AURDEDRAFT_111514
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 MRNIP C1_1
Other DBs
NCBI-ProteinID: EJD51976
JGI: 111514
AA seq 1217 aa
MSQYGTQYDYEEEERYQEDEYEDITQEDCWTIISSFFEEKGLVRQQLDSFDEFVQNTMQE
LVDENAELILHQGDQHTGQEGDANLRHEIKFGQIYLSRPTITEADGSVTPVFPQEARLRN
LTYSAPLYVEMRRSRLTGRESMTKPGDYDWQRDPNESTTMQKIWIGKVPIMLRSSFCILK
TLSDRDLYDLNECPYDQGGYFIINGSEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRS
AVEKGGKTISSFQVKMFHRNQEKTSGNTIKATIPYIKQDIPIWIVFRALGVMSDRDILEH
ICYDMHDVTMLEMLKPCIDEGFVIQEREQALSFIGVRGTTTGLNKERRLRYAQEILQKEM
LPHISMAEGSESKKAYFLGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRML
FRKLTKDVYRYLQKCVEARKEFNLSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVS
QVLNRYTFASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLA
LMACISVGSLSAPVIEFLEEWGLESLEENAHSGVPSTKVFVNGVWMGVHRDPANLVKTIK
KLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKEDE
SGAPYKWDNLIKTGVIELLDAEEEETVMICMTSDDLENSRLMSRGLAPRDADNEFDPAAR
LKSVVNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVR
QDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR
GLFRSIYYRSYMDVEKKSGMVALEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGE
DIIIGKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRI
RSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGVTPDIIINPHAIPSRMTIGHLVE
CLLSKVATMIGNEGDATPFTDLTVESVSQVLRQRGYHSRGLEVMYHGHTGRKLQAQVYLG
PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGLAAFLK
ERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKVAVSQLYIPYAAKLLIQELQS
MNIAARLYTVSTGRTRD
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgagccaatatggcactcaatatgactacgaggaggaggagcggtaccaggaggacgaa
tatgaggacataacgcaggaagactgctggaccatcatctcgtccttcttcgaggaaaag
ggcctcgtgcgccagcagctcgactcgttcgacgagtttgtccagaacacgatgcaagag
ctcgtggacgagaacgccgaactcatcctgcaccagggtgatcagcacaccggccaggag
ggggacgctaaccttcgtcacgagatcaagttcggccagatttatctctcgcgcccgacg
attacggaggcggacggtagcgtcacgcccgtcttcccgcaggaggcgcgtctgcgcaac
ctgacctactctgcgccgctctacgtcgaaatgcggagatctcgcctcaccggtcgcgaa
agcatgaccaagccgggcgactatgactggcaacgagacccgaacgagtcgaccaccatg
cagaagatctggattgggaaggttcccatcatgctccggtcgagcttctgcatcttgaag
acgctctcggaccgcgacctgtacgacttgaacgagtgcccctacgaccaaggcggttac
ttcatcatcaatggctcggagaaggtcctcatcgcccaagagcgcatggcggcaaaccat
gtctacgtcttcgccaaagcccagccctcgcctataaatttcctcgccgaaattcgcagc
gccgttgagaagggtggcaagactatcagctcgttccaggtcaagatgttccaccgcaac
caggaaaagacgagcggtaacacgatcaaagccaccattccttacatcaagcaggacatt
cccatctggattgttttccgcgcgctgggcgtcatgtccgaccgcgacatcctcgagcat
atctgctacgatatgcacgacgtgacgatgttggaaatgttgaagccttgcattgacgag
ggattcgtcatccaggagcgtgagcaagcgctcagcttcattggtgtgcgtggcacgact
acaggtctgaacaaggagcggcgtctgcgctacgcgcaggagatcctgcagaaggagatg
ctgccgcacatctcgatggctgagggctctgagtcgaagaaggcgtacttcctcggatac
atgatccatcggttgctgctcgccgcccttgagcgcagagagctcgacgaccgtgatcac
tttggcaagaagcggcttgacctcgcagggcctctgctcgcgagtctcttccgcatgctg
ttccggaagttgacgaaggacgtctaccggtacctgcagaagtgcgtggaggcgcgcaag
gagttcaatttgagcctcgcggtcaaggcgaacacgatcacgaacggactgaagtattcg
ctcgcgacgggcaactggggcgaccagaagaagtcgatgagcgcgaaggccggcgtgtct
caggtgctcaaccggtatacgttcgcgtcgacgctctcgcatctccggcgcacgaacacg
ccgctcgggcgtgagggcaagatcgcgaagccgcggcagctgcataatacgcactggggc
atggtgtgccctgcggaaacgcccgagggccaggcgtgcgggctcgtgaagaacctcgcg
ctgatggcgtgcatctccgtcggctcgctctccgcgccggttatcgagttcctcgaggag
tggggcctcgagtcgctcgaggagaacgcgcactcgggtgtcccgtcgacgaaggtgttt
gtcaacggcgtgtggatgggcgtgcaccgcgaccccgccaacctcgtcaagacgatcaaa
aagctgcgccgcaaggacgacatcagccccgaggtctccgtcgtgcgcgacatccgcgag
aaggagctccgcctgtacacggacgccggccgcgtgtgccgcccgctcttcatcgtcgag
gaccagcagctcgtcataaaaaagcaccatgtcgagtggatccagaacaaggaggacgag
tcgggcgccccctataagtgggataacctgatcaagacgggtgtcatcgagctactcgac
gctgaggaagaggagaccgtcatgatctgcatgacctcggacgacctcgagaactctcgc
ctcatgagccgcggcttggcgcctcgcgacgcagataacgagttcgacccggccgcgcgt
ctgaagtctgtcgtcaatgcgcacacctggacgcactgcgagatccacccgagtatgatc
ctgggcatttgcgcgagtatcattccctttccagatcacaaccagtctccgcgtaatacc
taccagtctgccatgggcaagcaagcgatgggtatctacttgacgaacttccaagttcgt
caggatacgatggccaacatcctgtactacccgcaaaagccactcgcgacgacgcgctcg
atggagtatctgaagttccgtgaacttccagccggccagaacgccattgtcgccatcctg
tgctacagcgggtacaaccaggaagattcagtcattatgaaccagagctccatcgaccgt
ggcctcttccgctccatctactaccgcagttacatggacgtcgagaagaagtccggcatg
gttgcgctcgaggagttcgagaagcccacgcgcgacacgacgctgcgtatgaagcacggc
acctacgacaagctcgaggatgacggcctcatcgcgcccggcaccggtgttgccggcgag
gacatcatcatcggcaagactgccccgctgccgcaggacagcgaggagctcggtcagcgg
acgcgcacgcaccagaagcgcgacgtctcgacgccgttgaagagcaccgagaacggcata
gtcgaccaggtgctcatcacaacaaaccaggacggacagaagttcgtcaagattcgcatc
cgctcgacgcgcgtgcctcagatcggtgacaagttcgcgtcgcgccacggacagaagggc
acgatcggcatcacgtaccggcaggaggacatgcccttcacggcggagggcgtcacgccg
gacatcatcatcaacccgcacgccatcccgtcccgcatgaccatcgggcacttggtcgaa
tgtctgctctcgaaggtcgcgacgatgatcggcaacgagggcgacgcaacgccgttcacc
gacctcaccgtcgagtccgtgtcgcaggtgctgcgccagcgtggctaccactcgcgcggc
cttgaggtcatgtaccacggccacacgggccgcaagctgcaggcgcaggtctacctcggc
ccgacgtactaccagcgcctgaagcacatggtcgacgacaagatccactcccgcgcgcgc
gggccagtgcagatcctgacgcgccagcccgtggaaggtcgtagcagagacggtggtttg
cgattcggagagatggagcgcgattgcatgatctcgcacggtctcgccgccttcctcaag
gagcgcttgttcgacgccagcgacgcgtacagactccacgtctgcgatatttgcggcttg
actgccattgcgaacctgaaaaagcagagcttcgagtgcagagcttgcaagaacaaggtc
gctgtttcgcagctttacattccctatgccgcaaagctgttgattcaggaattgcagagc
atgaatatcgctgcccgtctatacacggtgtccacgggtcgcacgcgcgactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (46)   

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