KEGG   Tsuneonella dongtanensis: A6F68_02022
Entry
A6F68_02022       CDS       T04466                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ado  Tsuneonella dongtanensis
Pathway
ado03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ado00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    A6F68_02022 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ado03400]
    A6F68_02022 (mfd)
Enzymes [BR:ado01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A6F68_02022 (mfd)
DNA repair and recombination proteins [BR:ado03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      A6F68_02022 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H SecA_DEAD RecG_dom3_C AAA_30 AAA_25 AAA_16
Other DBs
NCBI-ProteinID: ANY20530
UniProt: A0A1B2AED5
Position
complement(2045217..2048684)
AA seq 1155 aa
MPDLQKILSAKTPLTLSSIPRGAQPLVMADLARASKGRAVFIAPDEAAMSGLAEAARYFA
PELEVVEFPAWDCLPYDRASPALSVSARRLAALHRLQAGKTGSQLLVTTINAVLQRVLTP
FRVREAVREIRPGMEIAREALIALLQRQGYNRTDTVIDHGEFAVRGSIFDLFPSGLEAGL
RLDFFGDELESLRLFDPNTQMTTGVIERHLLIPASEALLDEDTIKRFRTRYRERFGANAT
QDPLYQAVSDGRRLAGMEHWLPLFEERMATLFDHLSPDDLLVIDNAALGAADERLTDVAD
YHRQREEGTYRPLPEDALYLTQGELDAALAEGPIHRASIFAEPEGAGVVDFGFRSGRDFA
PERTRGDNVYAAAADHLKAAGKAGKKPLLATYSKGSRARIASIIGEAGAPMALAETWQEA
LGLSAKGKPVALVLPLEAGFANEQVDLLTEADVLGDRLVRRKKKRKSADAFLAELQALNA
GDLVVHIDHGIGKYLGLEAIPVGKSKHDCVMLEYHGGDKLYVPVENLEVLSRYGSSEEMV
ALDRLGGEAWQKRRSRLKERIREIAHELLRTAAARALRKAAVVETEEASFNQFVDRFPWE
ETDDQDRAIEEVLEDLASGKPMDRLVCGDVGFGKTEVALRAAFATAMSGRQVAVVAPTTL
LARQHYENFAARFSGFPLKVGRLSRLVGAKEASDTRDGLKSGDIDVVIGTHAILSKSTEF
KNLGLVIVDEEQRFGVTHKEKLKQLRADVHVLTLTATPIPRTLQMAMSGLRELSTIQTPP
VDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRIADMPEVEEWLHKHVPEVKAIS
AHGQMSPTEVEERMSAFYEGKYEVLLSTTIVESGLDIPSANTIVIHRADRFGLAQLYQLR
GRVGRSKLRAYAYLTTPADTVLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLG
DEQSGHIREVGFELYQSMLEDAILAAKAGDVGLEREAGPSPQITVDAPIMIPEEYVPDLA
VRMGLYRRLNDARDQGEVESLAAEMIDRFGPLPAATANLVKLIEIKHQAIRANIAKIDVG
ARGTLVTFHKDDFPDPAGLIAWVERVGPDAKLRPDMKLVLARAWGDPQSRLNGLYQLTKG
LSGVALRAQAKKKAA
NT seq 3468 nt   +upstreamnt  +downstreamnt
atgcccgacctccagaagatcctgtccgccaagacgccgctgacgctgtcctcgatcccg
cgcggtgcccagccgctggtgatggcggacctcgcgcgggcgtcgaagggacgcgccgtc
tttatcgcgcccgacgaagcggcgatgtccggacttgccgaggccgcgcgatatttcgcg
cccgagctggaggtcgtcgagtttccggcgtgggactgcctgccctacgaccgcgcctcc
cccgccctctcggtcagcgcccggcggctcgccgcgctgcaccgtctccaggccggcaag
accgggtcgcaactgctggtcaccacgatcaacgcggtcctccagcgcgtactcaccccc
ttccgcgtgcgcgaggcggtgcgcgagatcaggccggggatggaaatcgcccgtgaggcg
ctgatcgcgctgctccagcgccagggctacaaccgcaccgacacggtcatcgaccacggc
gagttcgcggtgcgcggctccatcttcgacctatttccgagcggcctcgaggcggggcta
cggctcgacttcttcggcgacgagctggagtcgttgcgcctgttcgatcccaacacccag
atgaccaccggggtgatcgagcgccaccttctcattcccgcgagcgaggcgctgctcgac
gaagacacgatcaagcgtttccgcacccgttaccgggagcggttcggggccaacgcgacg
caggacccgctctaccaggcagtcagcgacggccggcgccttgcgggcatggaacactgg
cttcccctgttcgaggagcggatggcgacgctgttcgaccacctttcgcccgacgacctt
ctggtgatcgacaacgctgcgctgggtgccgccgacgagcgcctgacggacgtggccgac
taccaccgccagcgcgaggaaggcacatatcgcccgcttcccgaagacgcgctctacctg
acgcagggcgagctcgacgccgcgcttgccgaaggcccgatccaccgcgcctcgatcttt
gcggagcccgaaggcgcgggcgtggtcgatttcggtttccgctcggggcgcgacttcgca
cctgaacggacccgaggcgacaacgtctatgccgccgccgccgatcatctgaaggcggcg
ggcaaggcgggcaagaagcccttgctcgcgacctattccaagggcagccgcgcgcgcatc
gcgtcgatcatcggtgaagcgggcgcaccgatggcgctcgccgaaacctggcaggaggcc
ctcggcctcagtgcgaaaggcaagcccgtcgcgctggtcctgccgctcgaggccgggttc
gcgaacgagcaggtggatctcctcaccgaagccgacgtgctcggcgaccggctcgtccgc
cgcaaaaagaagcgcaagagtgccgacgccttccttgccgagcttcaggcgctcaatgcg
ggcgacctcgtggttcacatcgaccacgggattggcaagtacctcggcctcgaagcgatc
cccgtcggcaagtcgaagcacgactgcgtgatgctggagtaccacgggggcgacaagctc
tacgtgcccgtagagaacctcgaggtcctcagccgttacggatcgagcgaggaaatggtc
gcgctcgaccgattgggcggcgaggcgtggcagaagcgccgcagccgcctcaaggaacgc
atccgggagatcgcccacgaactgctccgcacggcggccgcccgcgcgctgcgcaaggct
gcggtcgtcgagaccgaggaagcgagcttcaaccagttcgtcgatcgcttcccgtgggag
gagaccgacgaccaggaccgcgcgatcgaggaagtcctggaagatctcgccagcggcaag
ccgatggaccgcctcgtctgcggcgacgtcggcttcgggaagaccgaggtcgccctgcgc
gctgccttcgcaaccgcgatgagcgggcgccaggtcgcggtcgtcgcgccgacgaccctg
ctcgctcgccagcactacgagaacttcgccgcgcggttctcaggcttcccgctgaaggtc
gggcgactcagccgcctcgtcggcgcgaaggaagcgtcggacacccgcgacggcctcaag
tctggcgatatcgacgtggtgatcggaacccacgcgatcctgtcgaaatcgaccgagttc
aagaacctcggcctcgtgatcgtcgacgaggagcagcgcttcggcgtgacgcacaaggaa
aagctcaagcagctgcgcgccgacgtccacgtcctcacgctcaccgccacgcccatcccg
cgcacgttgcagatggcgatgagcggcctgcgcgagctgtccaccatccagaccccgccg
gtcgaccgcctcgcggtgcggacttacgtcatggaatgggacgatatggtcatgcgcgag
gcactgctgcgcgagcatcaccgcggcgggcagagcttcatcgtcgtgccgcgtatcgcc
gacatgcccgaggtcgaggagtggctgcacaagcacgtgcccgaagtgaaggcgatcagt
gcccacggccagatgtccccgaccgaggtcgaagagcggatgagcgcgttctacgagggc
aagtacgaggtgctgctttcgacaacgatcgtcgagagtgggctcgacattcccagcgcc
aacacgatcgtgatccaccgggcggaccggttcggccttgcccagctctaccagctgcgc
ggccgcgtgggccggtcgaagttgcgcgcctatgcgtacctgacgacgccggcggacacc
gtgctgagcgaagtggcggaaaagcgcctcaaggttctgggcgatctcgacagcctgggc
gccgggttccaactcgccagccacgatctcgacattcgcggggcgggcaacctgctcggc
gacgagcagtcgggtcatatccgcgaggtcggtttcgagctctaccagtcgatgctggag
gacgcgatcttggccgccaaggcaggcgatgtcggtctcgagcgcgaggctgggcccagc
ccgcagatcacagtcgacgcgccgatcatgatcccggaggaatacgtccccgacctggcc
gtgcgcatgggtctctatcgccgcctcaacgatgcgcgcgaccagggcgaagtggagagc
ctcgccgccgagatgatcgatcgcttcgggcccctgcccgccgcgaccgcgaacctcgtc
aagctgatcgagatcaagcaccaggcgatccgcgcgaacatcgccaagatcgacgtgggt
gcgcgcggcacgctggtcacgttccacaaggatgatttccccgatccggcggggcttatc
gcctgggtcgagcgagtgggtccggacgcgaaattgcggcccgacatgaaactcgtgctg
gcccgcgcatggggcgacccgcagagccgcctcaacgggttgtaccagttgaccaagggt
ttgagcggggtcgcgttgcgggcacaggcgaaaaagaaggccgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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