KEGG   Aeromicrobium erythreum: AERYTH_07740
Entry
AERYTH_07740      CDS       T04236                                 
Name
(GenBank) ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
aer  Aeromicrobium erythreum
Pathway
aer03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aer00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AERYTH_07740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aer03019]
    AERYTH_07740
Messenger RNA biogenesis [BR:aer03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AERYTH_07740
SSDB
Motif
Pfam: RNase_J_C Lactamase_B Lactamase_B_2 RMMBL
Other DBs
NCBI-ProteinID: ALX04593
UniProt: A0A0U4BH73
Position
1637671..1639350
AA seq 559 aa
MSHMHTELGTPPALGTNTLRVIPLGGLGEIGRNMTVFEFGGKLLIVDCGVLFPEEHHPGV
DLILPDFGPIRDRLDDVVAVVLTHGHEDHIGGVPYLLRERGNIPVVGSKLTLALVEPKLR
EHRLRDVPQHVVAENDVLHLGPFELEFVAVNHSIPDALAVAVKTPAGVALHTGDFKMDQL
PLDGRITDLRAFARLGEAGVDLFLTDSTNADVPGFTVAERNITPAIDAVFASSSQRIIVA
SFASHVHRVQQVLDAAAKHGRKVAYVGRSMVRNMQIARDLGYLHVPDGVVVDKIDAAPPE
KMVLMSTGSQGEPMAALSRIANRSHQQVSLEPGDTVLLASSLIPGNENAVYRVIDGLTKL
GARVVHKGNALVHVSGHASAGELLYCYNIVKPSNVLPVHGEIRHLHANGALATQTGVPNV
LLAEDGYVIDLVDGHASIVGAVECGYVYVDGSSVGEITDSELKDRRILRDEGFISVVVVV
DSTNGKIVSGPEIQARGLAEDPSVFDEVTPRIVDAIEQSLRDGTHDTKQLQQVVRRVLGS
FAGRKLRRRPMIIPIVLEA
NT seq 1680 nt   +upstreamnt  +downstreamnt
ttgagccacatgcacacggagctggggacgcccccggcactcggcacgaacaccctgcgc
gtcatccccctggggggcctcggagagatcggtcgcaacatgaccgtcttcgagttcggc
ggcaagctcttgatcgtcgactgcggggtgctgttccccgaggagcaccacccgggcgtc
gacctgatcctccccgacttcggtcccatccgtgaccggctcgacgacgtcgtggccgtc
gtgctgacgcacgggcacgaggaccacatcggcggcgtgccgtacctgctgcgcgagcgt
ggcaacatcccggtggtcggctcgaagctgaccctcgccctcgtcgagccgaagctgcgc
gagcaccgcctgcgcgacgtcccgcagcacgtcgtggcagagaacgacgtcctgcacctc
ggcccgttcgagctggagttcgtcgcggtcaaccactccatccccgacgcgctcgccgtc
gcggtcaagacgcccgccggcgtcgcgctgcacacgggcgacttcaagatggaccagctg
ccgctcgacggccgcatcaccgacctgcgggccttcgcccgcctcggcgaggcgggggtc
gacctcttcctcaccgactccacgaacgccgacgtgcccgggttcacggtcgcggagcgc
aacatcaccccggcgatcgacgccgtgttcgcgtcgagcagccagcggatcatcgtcgcc
tcgttcgcctcgcacgtgcaccgcgtgcagcaggtgctcgacgccgcggcgaagcacggc
cgcaaggtcgcgtacgtgggtcgctcgatggtgcgcaacatgcagatcgcgcgcgacctc
ggctacctgcacgtgcccgatggcgtcgtcgtcgacaagatcgacgccgcaccgccggag
aagatggtgctcatgtccaccggctcgcagggcgagccgatggcggcgctgtcgcggatc
gcgaaccgcagccaccagcaggtgagcctggagccgggcgacaccgtgctgctggcgtcg
tcgctgatccccggcaacgagaacgcggtctaccgcgtgatcgacggcctgacgaagctg
ggggcccgcgtggtgcacaagggcaacgccctcgtgcacgtgtccggtcacgcgtcggcc
ggcgagctcctctactgctacaacatcgtcaagccgtcgaacgtgctgccggtgcacggc
gagatccgtcacctgcacgccaacggcgccctggccacccagaccggcgtgccgaacgtc
ctcctcgccgaggacggctacgtgatcgacctcgtcgacgggcacgcctcgatcgtcggc
gccgtcgagtgcggctacgtgtacgtcgacggctcctcggtcggcgagatcaccgacagc
gagctgaaggaccgccggatcctgcgcgacgagggcttcatctccgtcgtcgtcgtggtc
gactcgaccaacggcaagatcgtcagcggcccggagatccaggcacgtggactcgccgag
gatccgtcggtcttcgacgaggtcacgccgcgcatcgtcgacgccatcgagcagtcgctg
cgtgacggcactcacgacaccaagcagcttcagcaggtcgtccggcgcgtgctcggctcc
ttcgcgggccgcaagctgcggcgtcgtccgatgatcatccccatcgtcctggaggcgtga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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