KEGG   Asticcacaulis excentricus: Astex_2884
Entry
Astex_2884        CDS       T01378                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
aex  Asticcacaulis excentricus
Pathway
aex03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Astex_2884
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aex03400]
    Astex_2884
Enzymes [BR:aex01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Astex_2884
DNA repair and recombination proteins [BR:aex03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Astex_2884
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD Helicase_C CarD_TRCF_RID ResIII UB2H MFD_D3 SNF2-rel_dom SecA_DEAD AAA_16 RecG_dom3_C
Other DBs
NCBI-ProteinID: ADU14521
UniProt: E8RSQ0
Position
2:complement(566784..570290)
AA seq 1168 aa
MSDISRITAAATRLSLTGCPPGYDSLVASDLTRAEGLALFVARDHGRMNAIAEELAFYAP
ELDVIRFPAWDCLPYDRVSPTTGLIAQRMSGLTRLQALNGKPAKPVLILTTSASLSQKVP
PRDAMRGSLLSLKPGQSIETGELEAYFSRNGYNRVSTVSERGEFAVRGGIIDVFSPSQDE
PVRLDFFGDQLESIRTFDPETQRSLKQIAAIDFMAVSEILLDEKSISRFRQGYLENFGAP
GDDPIYAAVSAGIRRQGVETLLPLFYERLDSVFDYLPSQTLILLDGLAEQAFGEWRDSVL
DAYESRKGSGDARVMAKGAVKLDSGYRALPPDRLYLDDSEWQSGLQKGRVRQFETFQRDD
ASAIDLGARPGRSFAPERHQDSVNLFTAVTDHAKLLSKAGKRVLFASWTEGSSDRLGAML
SDHGLDKTRLAKDYADALSFGVAGTKAKPIQRAILPLDQGFETETLAVISETDILGDRLA
RPRKRRRANNFLAEASSLSQGDLVVHIEHGIGRYEGLKTLSVNDAPHACLELQYAADAKL
YLPVENIDLLTRYGADSDTTQLDRLGSASWQARKAKAKEKLREMADGLIQLAAARALKVG
QQIDPPSGLYDEFCAQFPYEETEDQLNAIHDVLDDLSKGHPMDRLICGDVGFGKTEVALR
AAFVVAMSGQQVAIICPTTLLARQHFKTFSQRFQGWPIRVRHLSRMVTRKEADETRDGLK
SGEVEVVIGTHALLSEQVGFKDLGLVIVDEEQHFGVKHKEKLKAFRADVHMLTLSATPIP
RTLQMALSGIREMSIIATPPVDRLAVRTYVLPFDAVSIREALLREKYRGGQAYYVVPRLK
DLPDLERFLREQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLLATTIVESGLDVPTA
NTLIVHRADMFGLAQLYQIRGRVGRSKTRAFAYLTTQPHQILSEASEKRLKVLQSLDNLG
AGFQLASHDLDIRGGGNLLGNEQSGHIREIGVELYQQMLEDAVNELRSRADEPATDNRGW
SPQINAGAAVMIPEDYIPDLNIRLSLYRRVSEAEKREDREALAAELIDRFGPIPEEAEQL
LKVVGIKGLCREANVAKFDVGPKGAVISFRNDQFSNPVGLIGLIQAHPRDWKLRPDQKLL
VRGEWPEAAGRLAAAEKIMTRLAAIAAG
NT seq 3507 nt   +upstreamnt  +downstreamnt
atgtctgatatttcccgcattactgccgctgcgacccgcctgtccctgaccgggtgtccg
ccgggttacgacagtctggtggcctcggacctgacgcgcgccgaggggctggcgctgttc
gtggcacgcgatcacggccgcatgaacgctatcgccgaagaactggccttctatgcgccg
gaactggacgtgattcgtttcccggcctgggactgcctgccttatgaccgggtgagcccg
acgacgggcctgattgcccagcgcatgagcggcctgacgcggcttcaggccctgaacggc
aaaccggcaaagcctgtgctgatcctcaccacatcggcctccttgtcgcagaaggtgccg
ccgcgcgacgccatgcgcggaagtctgttgtcgctcaaacccggtcagagcatcgaaacg
ggcgagcttgaggcctatttttcacgcaacggctataaccgcgtctcgaccgtttccgag
cgcggtgaatttgccgtgcgcgggggcattatcgacgtcttttcgcccagtcaggatgag
ccggtgcggctcgacttcttcggcgatcaactggaatccatccgcaccttcgatccggaa
acgcagcgctcgctgaaacagattgccgcgattgactttatggcggtgagcgaaatcctg
ctggatgaaaagagcatcagccgcttccgtcagggctatctggaaaacttcggcgcgccc
ggcgatgaccccatctatgcggcggtgtctgccggcatccgtcggcaaggcgtcgaaacc
ctgctgcctctgttttatgagcgcctcgacagcgtgttcgactatctgccgtcgcagacc
ctgatccttctggacggtctggctgaacaggcctttggcgaatggcgcgactccgtgctc
gatgcctatgaatcgcgcaaaggctcgggcgatgcccgcgtcatggccaaaggggccgtc
aagctggacagcggctatcgcgccctgccgcccgatcgcctctatctcgatgatagcgaa
tggcagagcgggctgcaaaagggccgcgtgcgtcaattcgagacctttcagcgcgatgat
gcctcggccattgatctgggcgcacgtccgggccgcagcttcgcgccggaacgccatcag
gacagcgtcaacctctttaccgccgtgaccgaccacgccaagctcctgtcgaaggccggt
aagcgggtcctgttcgcctcgtggaccgaaggctcatctgatcgtctgggggccatgctc
tccgatcacgggctcgacaagacgcgattagccaaagactatgccgatgcgctgagcttc
ggggttgccggcaccaaggccaagcctatccagcgcgccattctgccgctcgatcagggg
tttgagaccgagaccctggcggtcatttcggaaaccgacatcttaggtgatagattagcc
cgtccgcgtaaacgtcggcgtgctaataattttcttgccgaagcatcatccctgtctcag
ggcgatctggtcgtgcatatcgagcacggcattggccgttatgagggcctgaagacgctg
agcgtcaacgacgccccgcacgcctgcctcgagcttcaatatgccgcggatgccaagctc
tacctgccggtcgaaaatatcgacctgctgacgcggtacggggctgattctgacacgacg
caactggaccgtctgggctcggcgagctggcaggcgcgtaaagccaaggccaaggaaaag
ctgcgtgagatggccgatggcctgatccagctggccgccgcgcgtgcccttaaggtgggt
cagcaaatcgacccgccgtccgggctttatgacgaattctgcgcgcagttcccttacgaa
gaaaccgaggaccagctcaacgccatccacgatgtcctcgacgacttgtcgaaggggcat
ccgatggatcgtctcatctgcggcgacgtcggctttggcaagaccgaggtggcgttgcgc
gcggcctttgtggtggctatgtcgggtcagcaggtggccattatctgcccgacgacgctt
ctggcgcgccagcatttcaagaccttcagccaacgctttcagggctggccgatccgcgtc
cgtcatctgtcgcgcatggtgacgcgtaaggaggcggatgagacccgcgacggcctgaaa
agcggcgaggttgaggtggtgatcggtacgcacgccctgctgtctgagcaggtcgggttc
aaggatctgggccttgttattgtcgatgaggagcagcatttcggcgtcaagcataaggaa
aagctcaaggccttccgtgccgatgtgcatatgctgaccctgtcggcgacgccgatccca
cgtactttgcagatggccctttccggaattcgggaaatgtccatcatcgccacgccgccc
gtggaccgtctggcggtacgcacctacgtcctgcctttcgacgccgtcagcatacgcgaa
gcgcttctgcgcgagaaatatcgcggcgggcaggcctattacgtggtgccgcgcctgaaa
gacctgccggacctcgaacgcttcctgcgtgagcaggtgccggaggtgaagttcatcgtc
ggccacggtcagatgactccgacccagctcgaagaggtgatgactgccttctatgacggt
cagtacgacgtgctgctggcgaccaccattgtcgagtccggactggacgtgccgaccgcc
aatacgcttatcgtgcaccgcgccgacatgtttggtctggcgcagctgtatcagatccgc
gggcgtgtcgggcgttccaaaacgcgcgccttcgcctacctaacaacccaaccgcatcaa
atcttaagtgaagcttcagaaaagcgactgaaggtcttgcaatcgctggataatctgggg
gctgggttccagctggccagccacgatctggatatccggggcggcggcaatctgctgggt
aatgagcagtccggtcatatccgtgaaatcggcgtcgagctgtatcagcagatgctggaa
gacgccgtcaatgagttgcgcagccgcgccgatgagcccgctaccgataatcggggctgg
tcgccacagatcaatgccggcgctgcggtcatgatcccggaggactatattccggacctt
aatatccgcctgtcgttgtatcgccgtgtgtcggaagccgaaaagcgcgaggatcgagaa
gcgctggccgccgaactgatcgaccgctttgggcccattccggaagaggccgaacaactg
ctgaaggtagtggggatcaagggcctgtgtcgtgaagccaatgtggcgaagtttgatgtc
ggtccaaagggcgcggtcatcagcttccgtaatgatcagttcagcaatccggtggggctg
attggcctcattcaggcgcatccgcgggattggaaactgcgtccggatcagaagctgctc
gtgcggggcgaatggccagaagcggccgggcgtctggccgcggcagaaaagatcatgacg
cgactggcggcgatagcggccggttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (56)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (78)   

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