KEGG   Acidithiobacillus ferrooxidans ATCC 53993: Lferr_0559
Entry
Lferr_0559        CDS       T00758                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
afe  Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:afe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lferr_0559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afe03019]
    Lferr_0559
   03016 Transfer RNA biogenesis [BR:afe03016]
    Lferr_0559
Enzymes [BR:afe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Lferr_0559
Messenger RNA biogenesis [BR:afe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Lferr_0559
Transfer RNA biogenesis [BR:afe03016]
 Prokaryotic type
  tRNA degradation factors
   Lferr_0559
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 S1_2 aRib
Other DBs
NCBI-ProteinID: ACH82813
UniProt: B5EMD4
Position
523174..525252
AA seq 692 aa
MTMIRKEVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTV
NYQEKAYAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVD
RDNDPDILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAG
TRQAVLMVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEA
LGVQVREKATPLLQEAYALTEKQARSKRLEDVQQAMAVEFGSDDAGRGDMVRGLLKKIET
GIVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDE
QIIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFP
YSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDIL
GDEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLS
RGRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDG
EAGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDV
HDHLKEGQAVRVKVLEVDRQGKIKLSMKDIPQ
NT seq 2079 nt   +upstreamnt  +downstreamnt
ttgaccatgatccggaaagaagtagattttggcggccgccgcctgcaactggagacgggc
cgcatggcgcgtcaggcggacggtgcggtgctggtctccagcggagacacggtcgttctg
gtgacggcagtgggccgccgggagatgaagccgggccaggatttctttccgctgacggtc
aattatcaggagaaggcctacgcggcgggcaaaattcccggtggtttcttcaagcgtgaa
gggcggcccacggaaaaggagacgctgacgtcacgcctgatcgatcgtcctatccggccg
cttttccccaagggcttcatgaacgaagtgcaggtcatcgctacggtggtgtcggtggat
cgggataacgatcccgatattctggcactggtgggtgcctcggcggcgctggcggtttcc
ggtattccgttcaatggcccgattggcgcggcccgggtggcttacatcgacgggaaatat
gtgctgaatcccagttacgcgcaactgaccacttcgcaactggatctcgtggtggcggga
acccggcaggccgtactcatggtcgagtccgaggcgcagcagttgtccgaagagatcatg
ctggaagcggtgatgttcggtcacgcgcagttccagcccgtcatcgaaaccatcgaagcg
ctggcgcgggaggccggcaaaccgcgctgggagtgggtggcgccggtggccgatgaagca
ctgggtgtgcaggtgcgcgagaaagccacaccgcttctgcaggaggcctatgcgctgacg
gagaagcaggcgcgcagcaagcggctggaagatgtgcagcaggccatggcggtcgagttt
ggcagtgacgatgcgggacgcggagacatggttcgcggactgttgaaaaaaattgaaacc
ggcatcgtgcgaggacgtattctggatggcgcgccccgcatcgatggccgggacagcaag
acggtgcggcccatcaccatcgaggcgggtgtgttgccgcggacccatggttcggcgctc
ttcacccggggggaaacccaggccttggtggtggcgactttgggtaccaagggcgacgag
cagatcatcgacgccctgcagggcgaaagccgtgaccgctttatgctgcattacaacttc
ccgcccttctctaccggtgaaacgggtatggtgggttcgcccaagcgccgggagatcggg
cacgggcgcctggcgaagcgggcgatagcggcggtcctgccgaccgacagcgaattcccg
tacagcttacgggttgtttctgaggtactggagtccaacggctcttccagtatggcgacg
gtctgtggcgcctccttggcgctgatggacgcgggcgtacccctcaaggcgccggtggcg
ggcgtggccatgggcctcatcaaggaaggagcgcgttttgccgtcctcaccgatatcctg
ggcgatgaagatcatctgggcgatatggatttcaaggtggcgggcacggaacaaggggtg
accgccctgcagatggatatcaagatcgacgggattacccgggaaatcatggcgcaggcg
ctccagcaggcgctggcgggacgactgcatatcctcggcctgatgaatggcgtgctgtcc
aggggccgtggcgagttgtccgactacgcaccgcgcatcatcaccatccagatcaatccg
gatcgcatccgcgacgtcatcgggccgggcggtaaagtcatccgcgccctgaccgaagaa
accggcgcgaccatcgatatccaggacaacggcacggtaaccatcgcctcggtggacggt
gaagccggcgccgccgcgaagcgacgtatcgagttgctgacggcggatgtgcaagtcgat
accatttacgacggaaaagtggccaagatcatggatttcggcgcctttgtgacgattctg
ccggggcgcgacggtctgctgcacatttcccagatcagcaacgaacgggtcagcgatgtc
cacgaccatctcaaggaaggacaggcggtgcgtgtcaaggttctggaagtggatcgccag
ggcaagatcaagctgagcatgaaggacatcccgcaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (33)   

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