KEGG   Acidithiobacillus ferrivorans: Acife_2716
Entry
Acife_2716        CDS       T01595                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
afi  Acidithiobacillus ferrivorans
Pathway
afi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:afi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Acife_2716
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:afi03021]
    Acife_2716
   03400 DNA repair and recombination proteins [BR:afi03400]
    Acife_2716
Enzymes [BR:afi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Acife_2716
Transcription machinery [BR:afi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Acife_2716
DNA repair and recombination proteins [BR:afi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Acife_2716
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: AEM48793
UniProt: G0JRT9
Position
complement(2689571..2693734)
AA seq 1387 aa
MNALKDLLKLFKQNDQQEEFDAIRIGIASPDKVRSWSFGEVKKPETINYRTFKPEREGLF
CAKIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQARVRRERMGHIELASPVAHIWFL
KSLPSRMGMILDMPLRDIERVLYFEAYVVVDPGVTALERGNILTEDQYLDALEEHGDEFT
AKMGAEGIRDLLRGIPLTQEIERIRNELRESNSDTKTKKLSKRLKILEGFEQSGNRPEWM
ILEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKR
MLQEAVDALLDNGRRGRAISGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELRLHQCGLPKKMALELFKPFIFNKLEERGLATTIKAAKRLVEQEKPEVWDILEEVIR
EHPVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLSLEAQ
LEARTLMMSTNNILSPANGEPVIVPSQDIVLGLYYVSQERADAKGTGGIFADTAEVRRAY
ETGNLGLHARIIVRFRGERMDTTAGRALLGDILPEGLPFSVINRVLKKKVIGELINICYR
RLGVKDTVIFADQLMYTGFRMATRAGISFGAGDMVTPPEKEGILARSEDEVKAIQDQYTS
GLVTEGERYNKVVDIWSRATDEVAKAMMDRVSKDTVYLPDGSSVQQDSFNSIFMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT
ANSGYLTRRLVDVTQDLVVVETDCGSEEGLPMTSLVEGGEVIEPLRDRVLGRVVAEDVVH
PNTGEVVIARNTLLMEQHLGQLDELGVDALKVRSPLTCRSRHGVCALCYGRDLARGHLVN
AGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAQSSIDIKQGGVFRYQPNLRLVTHS
SGRHVVVGRNGEVTVTDEQGREKERYKVPYGATILVDDNASVTAGRRVAEWDPHTRPIVS
EVGGKISLKDAVEGASVAIQTDEITGLSTLVVIDAKQRPPQGRDLRPVISLLDEHGQDLK
LPGTDLPARYFLPAKAIIAVHEGMEIHPGDILARLPVGTTKTRDITGGLPRVAELFEARR
PKDFAVIAEHEGIIGFGKDTKGKQRLIITDENGDQHEYLIPKGRHVTVYEGERVSPGEQL
VEGQPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRRVEVTFSG
DSTFIPGDQVDRARVEDENIKLEAAGKELARFTPMLLGITKASLSTESFISAASFQETTR
VLTEAAVSGKVDDLRGLKENVIVGRLIPAGTGLAYHEHRRRLSRGEPVHSVEKAVRSDLS
VAVTETQ
NT seq 4164 nt   +upstreamnt  +downstreamnt
atgaatgccttgaaagacttgttaaagctcttcaaacaaaacgatcagcaagaagaattc
gatgcgattcggatcggtatcgcgtctcctgataaggtacggtcatggtcctttggcgaa
gtaaaaaagccggaaacgatcaattaccggaccttcaagccggagcgcgaggggctgttc
tgtgccaaaatttttgggccgatcaaagactacgagtgcctctgtggtaagtacaagcgt
cttaagcaccgcggcgtagtctgtgaaaagtgtggcgttgaggtgactcaggcgcgagtc
cggcgtgagcggatgggacacattgaacttgccagccccgtcgcgcatatctggtttctc
aaatctctgccgagtcgcatgggcatgattctcgatatgcccctgcgcgatatcgaacgg
gtcctttattttgaggcgtatgtggtggttgatccgggtgtaactgcccttgagcgcggg
aacatcctcaccgaagatcagtacttggacgctttagaagagcacggtgacgaatttacg
gccaaaatgggtgccgaaggtatccgcgacttgttgcgcggtattcccctgacgcaagaa
attgaacggatccgcaatgagctgcgggagagcaactccgatacaaagacgaaaaagctc
agcaagcgcctcaagattctggaaggctttgagcagtccggcaatcgtcctgagtggatg
atcttggaagtgctccccgtgttgccaccggatctgcgcccgctggtacctctggatggc
gggcgcttcgcgacctccgatctcaacgatctctatcggcgcgttattaaccgcaacaat
cgattgaagcgcctgctagaactgaaggctccagacatcattgtccgtaacgaaaaacgt
atgttgcaggaagcagtggatgcgcttctggataacggacgtcgcgggcgcgccatctcc
ggtcccaacaagcgtccgctcaaatcactggcggacatgatcaaaggtaagcagggtcgt
tttcgccagaacctgctcggcaaacgggtggattattccggccgctccgttatcgtcgtc
ggacctgagctgcgtttgcatcagtgcgggttgccgaagaaaatggccctggagctattc
aagcccttcatctttaacaagttggaggagcgtggcctggcgaccaccatcaaggccgcc
aagcgcctggttgagcaggaaaagccggaggtctgggatatccttgaagaggtgatccgc
gagcatccggtgatgctcaaccgtgcacccaccttgcaccgtcttggtatacaggctttt
gagccgatactgatcgaaggtaaggctattcaattgcacccgctggtgtgtgctgcgtat
aacgccgatttcgatggcgatcagatggcagtgcatgtcccgctttcgctggaggcacag
ctggaagcgcggacattgatgatgtccaccaacaatattctgagcccggccaacggggaa
ccggtgattgtgccgtctcaggacattgtacttggactttactacgtcagtcaggaacgt
gcagacgcgaagggtactggtggtattttcgcggatacggcggaagtgcggcgtgcttac
gaaaccggcaatctggggttgcacgctcgaatcatcgtccgctttcgcggggaacgtatg
gataccacggcaggacgtgccctgcttggggatattcttcccgaaggcctcccctttagt
gtgatcaaccgggtgctgaagaaaaaggtgatcggtgagctgattaatatctgttaccgc
cgcttgggtgttaaagacaccgtcatttttgccgaccagttgatgtatacaggctttcgc
atggccacccgtgcgggcatttccttcggtgcgggagacatggtgacccccccggaaaag
gagggcattctggcgcgctccgaggatgaggttaaagccattcaggaccaatatacctcg
ggtctggtgaccgagggcgaacgctataacaaggtcgtcgatatctggtcgcgcgctact
gatgaagtcgccaaggccatgatggatcgggtcagcaaagatacggtgtacttgcccgat
ggcagctcggtccagcaggattcgttcaactctatatttatgatggccgattccggggcg
cgtggttcggcggcccagatccgtcagcttgccggcatgcgtggcctgatggcaaagcct
gacggctcaattattgaaacccccatcaccgcgaacttccgtgaaggtctcaacgttctg
cagtactttatctccacccacggtgcccgtaagggtcttgccgataccgcgctaaaaacg
gcgaactccggatatttaacgcggcgtctggtggatgtgactcaggatctggtcgtggtt
gagaccgattgcggttcggaggaaggtctgcccatgacctctctcgtggagggtggtgag
gtcatcgaaccactgcgcgaccgcgtattgggtcgtgtagtggcggaagatgtggttcat
cccaacaccggtgaagtcgtcattgcccgcaataccctgctcatggaacagcacctgggt
caattggacgagttgggtgttgatgccctgaaggtgcgttcaccgctaacctgtcgttca
cggcatggtgtctgtgcgctgtgttacggacgtgatctggcgcgcggccatctggtcaat
gcgggcgaagcggtcggcgttattgctgcccagtccattggtgaaccaggtacccagctg
actatgcgcacctttcacatcggtggtgcagccagtcgttctgcggcacagagcagcatc
gatattaagcagggcggggtgttccgttaccagcccaaccttcggctggtcacccactcc
agtgggcgccatgtggtcgtcggacggaatggtgaggtgacggtcaccgatgagcagggg
cgtgaaaaggagcgttacaaagtaccttacggcgcgaccatcctggtggatgacaatgca
tcggttactgcaggccggcgggtggcagaatgggatccgcatacgcggcctattgtcagc
gaagtcggcggtaaaatttctttgaaagatgcggtggaaggcgcgagcgtggccattcaa
accgacgaaatcacagggctgtcgacgcttgtcgtcatcgatgctaaacaacgcccaccg
cagggccgcgatttgcggccggtgatcagtttgctggatgagcatggccaggatctgaaa
ttgccgggcaccgatttgccggcacgttatttcctgccggcaaaggcgattatcgcggtg
catgaaggcatggaaattcatcctggtgacattctggcacgtttgccggtgggtaccacc
aagacgcgcgacattaccggtggtttgccccgagtggctgaactctttgaggcacgacgt
cccaaggacttcgctgttatcgcggagcacgagggcatcattggcttcggcaaagacacc
aagggtaagcagcgactgatcatcaccgacgagaatggggaccagcacgagtatcttatt
cctaaaggtcgccacgtgacggtctacgaaggcgagcgggtcagtcccggtgagcagctc
gtagaggggcagccggttccacatgatattttgcgcgtattaggtgtgcaggctttggcc
aattacatcgtcgatgaagtgcaggatgtataccgtctgcagggcgtgcgtatcaatgat
aagcatatcgaggtaattctgcgccaaatgctgcgcagggtcgaggtgacatttagcggg
gatagcacctttattcccggcgaccaggtagaccgggcgcgggttgaagatgaaaatatc
aagctggaagctgccggcaaagaactggcgcgctttaccccgatgctgttgggcatcacc
aaggcaagcctgtccacggaatccttcatctcggcggcgagtttccaggaaaccacccgc
gtactcaccgaggccgcagtatcaggcaaggtggacgacttgcgaggtctgaaggaaaac
gtcattgtcggacgtctgatacccgcagggacgggtctcgcttatcatgagcatcgtcgg
cgactgagtcgcggggagcctgtccattccgtggagaaggcggtgcggagtgatctctcc
gtagcggtaaccgaaacccagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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