KEGG   Actinoplanes friuliensis: AFR_28570
Entry
AFR_28570         CDS       T02892                                 
Name
(GenBank) DNA polymerase LigD ligase domain-containing protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
afs  Actinoplanes friuliensis
Pathway
afs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:afs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AFR_28570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afs03400]
    AFR_28570
Enzymes [BR:afs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AFR_28570
DNA repair and recombination proteins [BR:afs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AFR_28570
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AGZ43975
UniProt: U5W7K1
Position
complement(6214880..6216049)
AA seq 389 aa
MSAGEVIEPMLATLGEPPAGDDVALEFKWDGIRCLAYVDDGVRLFSRNGRDITTGYPELA
ELVPLAAGHRVVLDGELVALDSAGVASFERLQQRMHLSAPAPALVTAVPVVYEVFDLLFL
DGEATTALPYLQRRELLAGLDLAGDAVRVPAHFVNADPAAVLTAARSQGLEGIVAKRLGS
TYQSGRRSRDWIKVPFNQTQEIVVIGWKPGGGRRSGTIGSLLTAVTGPDGNLAYAGGVGT
GFTQAMLEQLQGMLAPLSRPTPAVAGIPRVDARGARWVEPVIVGEVSFRNWTGDGKMRHP
SWRGLRPDKSPARVPRVTPPVETIDGVMQTLGGSWRVEVVRRGSVTSYRIVHGEDVIDWL
PDIADVERILTRAGVAMEALQPAQRRTSA
NT seq 1170 nt   +upstreamnt  +downstreamnt
atgagcgccggcgaggtgatcgagccgatgctggccacgctcggggagccgccggccggg
gacgacgtcgcgctggagttcaagtgggacggcatccgctgcctcgcctacgtcgacgac
ggcgtgcggttgttctcgcggaacggccgggacatcaccaccggttaccccgagctggcc
gagctggtacccctcgcggccgggcatcgtgtggtcctcgacggggagctcgtcgccctg
gattccgcgggggtcgcctcgttcgagcggctgcagcagcgcatgcacctcagcgcacct
gcgccggcgctcgtcaccgccgtaccggtggtctatgaagtctttgacctgctgtttctt
gacggtgaggccacgaccgcgctgccttatctccagcgtcgcgagctgctggccggtctt
gatctggccggtgatgcggtgcgcgtcccggcgcattttgtgaacgccgacccggcggcg
gtgctgaccgccgcccgcagccagggcctcgaggggatcgtcgccaagcggctggggtcg
acctaccagagcggccggcgctcccgcgactggatcaaggtgccgttcaaccagacccag
gagatcgtggtcatcggctggaaacccggcggcggacgccgctccgggaccatcggttcg
ctcctgaccgcggtcaccggacctgacggcaacctcgcgtacgccgggggagtgggcacg
ggcttcacccaggcgatgctcgagcagctccagggcatgctggcgccgctgagccgcccc
acacccgcggtggcgggcataccgcgtgtcgatgcgcggggtgcccgctgggtggaaccg
gtgatcgtcggtgaggtgtcgttccggaactggaccggcgacggcaagatgcgccacccg
tcgtggcgtggtctgcggccggacaagagcccggcgcgggtgccccgggtgacaccaccg
gtcgagacgatcgacggtgtcatgcagaccctcggcggctcgtggcgggtcgaggtggtg
cgccgcggcagcgtcacgtcgtaccggatcgtgcacggtgaggacgtgatcgactggctg
ccggacatcgccgacgtcgagcgcatcctgacccgcgccggggtggcaatggaagctctg
cagcccgcccagcgccggacatcggcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system