KEGG   Actinoplanes friuliensis: AFR_36995
Entry
AFR_36995         CDS       T02892                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
afs  Actinoplanes friuliensis
Pathway
afs03030  DNA replication
afs03410  Base excision repair
afs03420  Nucleotide excision repair
afs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AFR_36995
   03410 Base excision repair
    AFR_36995
   03420 Nucleotide excision repair
    AFR_36995
   03430 Mismatch repair
    AFR_36995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afs03032]
    AFR_36995
   03400 DNA repair and recombination proteins [BR:afs03400]
    AFR_36995
Enzymes [BR:afs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AFR_36995
DNA replication proteins [BR:afs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AFR_36995
DNA repair and recombination proteins [BR:afs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AFR_36995
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AFR_36995
   MMR (mismatch excision repair)
    DNA ligase
     AFR_36995
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AFR_36995
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH EHD_N
Other DBs
NCBI-ProteinID: AGZ45653
UniProt: U5W8Y9
Position
complement(8076118..8078352)
AA seq 744 aa
MPENQSVETGSAAAAEQLAEGRPTAEQVAAAGAEPTSEASARHAELSDELRGHQYRYYVL
DSPTISDAEFDKLLRELEALEERFPALRTPDSPTQNVGGTFSTLFTPVEHAERMMSLDNV
FDEDELAAWAERTERDAGAPVRFICELKVDGLAINLTYEKGRLVRGATRGDGRTGEDVTS
NVRTIREIPERLADDNPPELLEVRGEIYFPASAFADLNASLVEQGKAPFANPRNAAAGSL
RQKDPRITASRGLRMVVHGIGARKGFRPDSQSHAYEALKSWGLPTSERWRLVDGMDEVRD
YIAYYGKNRHSVEHEIDGVVVKVDSVAIQGRLGSTSRAPRWAIAFKYPPEEVTTKLLDIA
VNVGRTGRVTPYAVLEPVLVAGSTVAQATLHNAREVERKGVWIGDTVVLRKAGDVIPEVL
GPVMDLRPDDAHPFVMPTVCPECSTPLAPAKESDIDIRCPNTQHCPGQLRERLFYLASRD
ALDIEVLGYKAARALYESGILTDESDLFSLTADDLLRSPFFVNMDGTLGSNAVKLLENLE
EVKQRPLWRVLVALSIRHVGPKASRALALEFGSMEKIEAAVEDGPIEDLSAVDGVGPTIA
ESLREWFSVDWHREIVRKWREAGVKMADEHSESGPRPLAGLTLVVTGTLSTHTRDEASEA
IMAGGGKVSGSVSKKTGFVVVGDNPGSKYDKALSLRVPVLDEAGFAVLLADGPEAARAVA
EISEEPVKEPKKKAAAKPSNEEAG
NT seq 2235 nt   +upstreamnt  +downstreamnt
gtgcctgagaaccagtctgtcgaaacggggtcggccgcggccgccgagcagctcgcggag
ggccggccgactgctgagcaggtcgcggcggccggtgccgagccgacctccgaggccagc
gcccggcacgccgagctgagtgacgagctgcgcggccatcagtaccgctactacgtgctc
gactcgccgaccatctcggacgccgagttcgacaagctgctgcgcgagctcgaggcgctc
gaggagcgttttcccgcgctgcgcacccccgactcgccgacgcagaatgtcggcggcacg
ttctccacgttgttcacgccggtcgagcacgccgagcggatgatgtcgctcgacaacgtc
ttcgacgaggacgagctggccgcctgggccgagcgcaccgagcgcgacgcgggcgctccg
gtccggttcatctgcgagctcaaggtcgacggcctggcgatcaacctcacgtacgaaaaa
gggcggctggtgcgcggcgcgacccggggcgacggtcgcacgggtgaggacgtcacctcc
aacgtccggacgatccgtgagatcccggagcggctggccgacgacaacccgcccgagctg
ctcgaggtgcggggcgagatctacttcccggcgtccgcgttcgccgatctcaacgcgtcg
ctggtcgagcagggcaaggcgccgttcgccaatccgcgtaatgccgccgcgggcagcctg
cggcagaaggatccgcgcatcaccgcgtcgcgggggctgcgcatggtggtgcacggcatc
ggcgcgcgcaaaggcttccggcccgactcgcagtctcacgcgtacgaggcgttgaagtcc
tggggtctgcccacgagcgagcggtggcggctggtcgacgggatggacgaggtgcgcgac
tacatcgcgtactacggcaagaacaggcactccgtcgagcacgagatcgacggtgtggtc
gtcaaggtcgactcggtcgcgatccaggggcggctgggctcgacgagccgggcgccacgc
tgggcgatcgcgttcaaatacccgcccgaggaggtcaccaccaaactcctcgacatcgcg
gtcaacgtggggcgcaccgggcgggtcaccccgtacgccgtgctggagcccgtcctcgtc
gccggctcgacggtggcgcaggcgacgctccacaacgcgcgtgaggtcgagcgcaaaggt
gtgtggatcggcgacacggtcgtgctgcgtaaggccggtgacgtcatcccggaggtgctc
gggccggtcatggacctgcgaccggacgacgcccacccgtttgtcatgccgaccgtgtgt
cccgagtgcagcacgccgctcgctcccgccaaggagagcgacatcgacatccgctgcccc
aacacccagcactgccccgggcagttgcgggagcgcctgttctacctggccagccgggac
gctctcgacatcgaggtgctcggttacaaggccgcccgcgcgctctacgagtcggggatc
ctgaccgacgagagtgacctcttcagcctgaccgcggacgacctgctgcggtcaccgttc
ttcgtcaacatggacggcacgctgggcagcaacgccgtgaagctgctggagaacctcgag
gaggtgaagcagcggcccctctggcgggtgctggtggcgttgtcgatccggcacgtcggt
ccgaaggcgtcgcgggcgctggccctggagttcgggtccatggagaagatcgaggctgcg
gtcgaggacggtccgatcgaggacctgtccgcggtggacggggtcgggccgacgatcgcg
gaaagcctccgcgagtggttctcggtggactggcaccgcgagatcgtccgcaagtggcgc
gaagccggcgtcaagatggccgacgaacactccgagagcggcccgcgtccgctggccggt
ctgacgttggtcgtgaccgggacgttgtccacccacacccgcgacgaggcttccgaggcg
atcatggccgggggcggcaaggtcagcgggtcggtctccaagaagaccggctttgtggtg
gtgggcgacaaccccggcagcaagtacgacaaggctttgtcgctgcgggtgccggtgctg
gacgaggcgggctttgcggtgctgctggcggacggccccgaggctgctcgtgcggtcgcc
gagatctccgaggagccggtgaaggagccgaagaagaaggcggcggcgaagccttcgaac
gaggaggccggataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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