KEGG   Anopheles gambiae (malaria mosquito): 1270599
Entry
1270599           CDS       T01036                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
aga  Anopheles gambiae (malaria mosquito)
Pathway
aga03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aga00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    1270599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aga03021]
    1270599
   03019 Messenger RNA biogenesis [BR:aga03019]
    1270599
Transcription machinery [BR:aga03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     1270599
Messenger RNA biogenesis [BR:aga03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     1270599
SSDB
Motif
Pfam: CPSF_A MMS1_N
Other DBs
NCBI-GeneID: 1270599
NCBI-ProteinID: XP_061513233
VectorBase: AGAP011340
Position
3:79136854..79142322
AA seq 1452 aa
MFSLCKQPHEATAVEFSLTCHFFNHNEKSLVTGGANVLKVYRVIPDADPATRDKYTAARP
PNMKLECVASYRLNGNIKSMQSVSLAGSLRDALLISFPDAKLSVVQFDPDNFDLKTLSLH
YFEDEDIRGGWTGHYHIPMVRVDPDNRCAVMLVYGRKLVVLPFRKDSSLDEIELQDVKPI
KKAPMQLVAKTPILASYIIELKDLDEKIDNVIDIQFLHGYYEPTLLILYEPVRTFPGRIA
VRSDTCTMVALSLNIQQRVHPVIWTVNSLPFDCIQAIPINKPIGGCLVMCVNSLIYLNQS
VPPYGVSLNSSADHSTSFPLKPQDGVRISLDAAQVCFIEPEKLVLSLKGGELYVLTLCAD
SMRSVRNFHFNKAAASVLTSCICVCEDEYLFLGSRLGNSLLLRFKEKDESLVITIDDSGA
VEKEPKRPRLEEEELEVYGSGYKTSVQLTSYIFEVCDNVLNIGPIAHMAVGERVAEEDAE
NQPDVQIVQNKLDIEVVTSSGHGKNGALCVLQSSIKPQVITSFGLSGCVDVWTVFDEAVA
RRAEDGPSTHAFMILSQEGGTMVLQTGEEINEIENTGFATTVPTIHVGNIGTNRFIVQVT
TKSIRLLQGTRLLQNIPIDLGCPLASVAIVDPYVCVRSSEGRVITLALREGKGTPRLAVN
KNTISPTPAVVAISAYRDVSGLFTKKIEDVYDLSRGGAASAYSSGFGSMKPEPHMKIEDE
EDLLYGESGRSFKMTSMADMAIAGKSGGSADFWMKYMQQVKPTYWLFAARDNGTLEIYSM
PDLKLVYLITNVGNGNKVLSDSMEFVPLPMGKSASQEDASSAFGASFGVSASLLPKEILM
VALGSYGSRPLLFIRLEHDLLIYRVFRYAKGHLKLRFKRLSTSVTCPVFRTVPARFANLD
SKTAAGSTEPEPSGAGATEAANEQQQARATKVLYENISMIRYFANVSGYAGVAVCGEKPY
FLFLTAHGELRSHRLYARTVMKAFAPFNNVNCPNGFLYFDEQYELKISIFPTYLSYDSVW
PVRKIPLRSSPKQIVYHRENKVYCVVMDAEEICNKYYRFNGEDKELTEENKGERFLYPMG
HRFSVVLVTPAAWEVVPETSINLEEWEHVIALKNVSLTYEGARSGLKEYIAVGTNFNYSE
DITSRGRLLLYDIIEVVPEPGKPLTKHKFKEVIVKDQKGPVSAISHVCGFLVGAVGQKVY
LWQMKDDDLVGVAFIDTNIFVHQMVSIKSLILVADVYKSVSLLRFQEEYRTLSVVSRDYH
PLNVYQVEYVVDNANLGFLVSDDQCNLITYMYQPESRESFGGQRLLRKSDYHLGQQVNCM
FRVQCDFHETDVMKRTLNYDNKHTTFFATLDGGIGFVLPLPEKTYRRLFMLQNVLLTHSP
HTCGLNPKAYRTIKQTRKLPINPSRCVVDGDLVWSFLELPANEKHEVAKKIGTRIEEICA
DLMEIEHVTHAL
NT seq 4359 nt   +upstreamnt  +downstreamnt
atgttttccctgtgcaagcagccgcacgaagcgacggcggtcgagttttcgcttacgtgc
catttcttcaaccacaatgaaaaatcgctcgttaccggcggtgccaacgtgctcaaggtg
taccgcgtcatcccggacgcggatccggccacgcgggacaagtacactgcggcacgaccc
ccgaacatgaagctggaatgtgtggcatcgtaccggctgaatggtaacatcaaatcgatg
caatcggtatcgctggccggttcgctgcgggacgcgctgctcatcagctttccggacgcg
aagctctcggtggtacagttcgatccggacaacttcgatctcaagacgctgtcgctgcac
tacttcgaggatgaggacatccgcggtggctggacgggccactaccacataccgatggtg
cgcgtcgatccggacaaccggtgcgcggtgatgctggtgtacgggcgcaagctggtggtg
ctgccgttccgcaaggacagctcgctggacgagatcgagctgcaggacgtgaagccgatc
aagaaggcgccgatgcagctggtagccaagacgcccattctggcgtcgtacatcatcgag
ctgaaggatctggacgagaagattgacaacgtgatcgatatacagttcctgcacgggtac
tacgagccgacgctgctgatactgtacgagccagtacgaacgtttccgggtcgtattgct
gttcgttccgatacgtgcacgatggtggcattgtcgctaaacattcagcagcgtgtgcat
ccggtcatttggacggtaaacagcctgccgttcgattgcatacaggcgatcccgatcaac
aaaccgatcggggggtgtttggtgatgtgcgtcaactcgctgatctacctcaaccagagc
gtcccaccgtacggtgttagcttgaatagtagtgccgatcatagcacaagcttcccattg
aaaccacaggacggtgtgcggatcagcctggatgcggcgcaggtttgcttcattgagccg
gaaaagcttgtcctctcgctcaagggcggcgagctgtacgtgctgacgctctgtgccgac
tcgatgcgcagtgtgcgaaactttcatttcaacaaggccgccgccagtgtgctgacgagt
tgtatctgtgtgtgtgaggatgagtaccttttccttggctcccggctcgggaactcgctg
ctgcttcgcttcaaagagaaggacgaaagcttggtgatcacgatcgacgacagtggggcg
gtcgagaaggagccgaagcgaccgcggctggaggaggaagagctcgaggtgtacggcagc
gggtacaaaacgtccgtgcagctgacgagctacattttcgaggtgtgcgacaatgtgctg
aacattggcccgatcgcgcacatggcggtcggcgagcgggtggccgaggaggatgcagaa
aaccagcccgacgtgcagatcgtgcagaacaagctcgacatcgaggtggtgacgtcgagc
gggcacggcaagaacggcgccctgtgtgtgctgcagagctcgatcaaaccgcaggtcatc
accagcttcggcctgtccggctgtgtggacgtgtggacggtgttcgatgaggcggtggcg
cgcagggcggaggacggcccctcgacccacgcgttcatgatactgtcgcaggagggcggc
acgatggtgctgcagacgggcgaggagatcaacgagatcgaaaacacgggcttcgcgacg
acggtgcccacgatccacgtgggcaacatcggcacgaaccggttcatcgtgcaggtgacg
acgaaatcgatccggctgctgcagggcacccggctgctgcagaacataccgatcgatctc
ggctgcccgctcgcgtccgtcgcgatcgtcgatccgtacgtgtgcgtgcggtcgtccgag
gggcgcgtgattacgctcgcgctgcgcgagggcaagggcacaccccggctggcggtgaac
aagaacacgatcagcccgacgccggccgtggtcgcgatcagtgcgtaccgggacgtgtcc
gggctgttcacgaaaaagatcgaagacgtgtacgatctcagcaggggcggcgccgcgtcc
gcgtactcgagcgggtttgggtcgatgaagccggagccgcacatgaagatcgaggacgag
gaggacctgctgtacggcgagtcgggccgctcgttcaagatgacctcgatggcggatatg
gcgatcgcgggcaagagcgggggcagcgccgacttctggatgaagtacatgcagcaggtg
aagccgacgtactggctgtttgcggcgcgcgacaacggcacgctggagatttactccatg
cccgacctgaagctggtctacctgatcacgaacgtcggcaacggcaacaaggtgctgtcc
gattcgatggagtttgtgccgctgccgatgggcaagagcgcgtcgcaggaggacgctagc
agtgcgtttggggcgagcttcggcgtgtccgcctcgctgctgccgaaggagatactgatg
gtggcgctggggagttacggatcccgcccgctgctcttcatacggctcgagcacgatctg
ctgatttatcgcgtgtttcggtacgcgaagggccacctgaagttgcgcttcaagcggcta
tcgaccagcgttacctgtccggtgttccggacggtcccggcacggttcgccaatctcgat
agcaagacagcggccggcagcacggagccggaaccgtccggtgcaggcgcaacggaggcg
gcgaacgagcagcagcaggcacgcgccacgaaggtactgtacgagaacatttccatgata
cgctactttgccaacgtgtccgggtacgcgggggtggcggtgtgcggcgagaagccctac
ttcctgtttctgaccgcgcacggggagctgcggtcccaccggctgtacgcgcgcaccgtg
atgaaagcgttcgcgccgttcaacaacgtcaactgcccgaacgggttcctctacttcgac
gagcagtacgagctgaagatatccatctttccgacctacctgtcgtacgattccgtctgg
ccggtgcgcaagataccgctgcgcagctcgcccaagcagatcgtgtaccatcgcgagaac
aaggtgtactgtgtggtgatggatgcggaggagatatgtaacaagtactaccggttcaac
ggggaggacaaggagctgaccgaggagaacaagggcgagcggttcctgtacccgatgggg
caccggttctcggtggtgctcgtgacaccggccgcctgggaggtggtccccgaaacgtcg
atcaatctggaggagtgggagcacgtgatagcgctgaagaacgtgagcctcacgtacgag
ggtgcccggtcggggctgaaggagtacattgcggtcggcacgaactttaactacagcgag
gacatcacgtcgcgcggccggctgctgctgtacgacatcattgaggtggtgcccgagccg
ggcaaaccgctcaccaagcacaagttcaaggaggtgatcgtgaaggaccagaagggcccg
gtgtcggcgatttcgcacgtgtgcggctttctcgtcggtgccgtcgggcagaaggtgtac
ctgtggcagatgaaggacgacgatctggtcggcgtcgcgttcatcgacacgaacatcttc
gtgcaccagatggtttcgatcaagtcgctcatactggtggcggacgtgtacaaatcggtg
agcctgttgcgcttccaggaggagtaccggacgctgtccgtggtgtcgcgcgactaccat
ccgctgaacgtgtaccaggtcgagtacgtggtggacaacgcgaacctcggctttctcgtg
tcggacgaccagtgcaatctgatcacctacatgtatcagccggagtcgcgcgaatcgttc
ggcgggcagcgactgctgcgcaagagcgactaccatctcgggcagcaggtgaactgcatg
ttccgggtgcagtgcgacttccacgagacggacgtgatgaagcgcacgctcaactatgac
aacaagcacacgacgttcttcgcgacgctcgacggcggcatcgggtttgtgctgccgctg
ccggagaaaacgtaccgccggctgttcatgctgcagaacgtgctgctgacgcacagcccg
cacacgtgcgggctcaacccgaaggcgtaccgcacgatcaagcagacgcgcaagctgccc
atcaacccgagccggtgcgtcgtggacggcgatctggtgtggagctttctcgagctgccg
gcgaacgagaagcacgaggtggcgaaaaagatcggcacacgcatcgaggagatctgtgcc
gatctgatggagatcgagcatgtgacgcatgcgctctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   VECTORBASE (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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