KEGG T03948: AA314

Archangium gephyra: AA314_03647

Entry

AA314_03647       CDS       T03948

Name

(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

age Archangium gephyra

Brite

KEGG Orthology (KO) [BR:age00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:age03016]
    AA314_03647
Enzymes [BR:age01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     AA314_03647
Transfer RNA biogenesis [BR:age03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    AA314_03647
Prokaryotic type
   tRNA splicing ligases
    AA314_03647

SSDB

Motif

Pfam:

RtcB Rnk_N

Other DBs

NCBI-ProteinID:

AKJ02021

Position

4443708..4444865

AA seq 385 aa
MMPRVLESPPVALPILAWAREVPPGAVKQLQHIASQPYVVEHVAAMPDVHVAQGVAVGTV
FATEHTVVPGALGGDLGCGVSAHRFAFPAASLGRADLERLLSAVARRVPVGDAVHRGAGL
PLPPELQAASLSTHRLQKEWERLAPRHLATLGGGNHFLELDRDAGGDLWLLIHTGSRGIG
GAIASHHVRVAATRGEGSLPGLRTDSSEGAACLADIAWACRFARANRDVLAARAVEVLAE
ALGCEPEPGASVDVHHNHVEAETHLGRTLLVHRKGAVGLEAGQRGLIPGSMGTASYVVEG
RGEARAFRSCSHGAGRVLTRSEARARIRPAALEQALRRVVFDRGRVESLVEEAPAAYRDI
AEVLEDEEDLVTPVLRLTPIAVLKG

NT seq 1158 nt +upstreamnt +downstreamnt
atgatgcctcgtgtcctcgagagcccgcccgtggccctgcccatcctcgcctgggcccgc
gaggtgccgccgggcgcggtgaagcagctccagcacatcgccagccagccgtacgtggtg
gagcacgtggcggcgatgccggacgtccatgtggcgcagggggtggccgtgggcaccgtc
ttcgccaccgagcacactgttgttccgggggcgctcgggggagacctcgggtgcggcgtc
agtgcccaccggttcgccttcccggcggcgtcactggggcgggcggacctggagcggctg
ctgtcggccgtggcgcgccgggtgccggtgggagacgcggtgcaccggggcgcgggcctg
cctctgcccccggagctccaggccgcgagcctctccacccatcggctccagaaggagtgg
gagcgcctcgcgccgcggcacctggccacgctcgggggcggcaaccacttcctcgagctg
gaccgggacgcggggggagacctgtggctgctcatccacacgggctcacggggcattggc
ggcgccattgcctcgcaccacgtgcgggtggccgccacgcggggagagggctcgctgccg
ggcctgcgcaccgactcgtccgagggggccgcgtgcctggcggacatcgcctgggcctgc
cgtttcgcccgcgccaaccgggacgtgctcgccgcgcgagcggtggaggtgctggccgag
gcactcggctgcgagccggagccgggcgcgagcgtggacgtgcaccacaaccacgtggag
gcggagacgcacctgggccgcacgctgctcgtgcaccgcaagggcgcggtggggctggag
gccgggcagcggggcctcattcctggctcgatggggacggcctcgtacgtggtggagggg
aggggagaggcgagggccttccgctcctgctcacacggggcggggcgcgtgctcacccgg
agcgaggcccgggcgcgcatccgcccggcggcgctggagcaggcgctgcgccgggtggtg
ttcgaccggggccgggtggagtcgctggtggaggaggctccggcggcctaccgggacatc
gcggaggtgctggaggacgaggaggacctggtgacgcccgttctgcggctcacacccatc
gccgtgctcaagggctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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