KEGG   Archangium gephyra: AA314_06210
Entry
AA314_06210       CDS       T03948                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
age  Archangium gephyra
Pathway
age03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:age00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AA314_06210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:age03019]
    AA314_06210
   03016 Transfer RNA biogenesis [BR:age03016]
    AA314_06210
Enzymes [BR:age01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AA314_06210
Messenger RNA biogenesis [BR:age03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AA314_06210
Transfer RNA biogenesis [BR:age03016]
 Prokaryotic type
  tRNA degradation factors
   AA314_06210
SSDB
Motif
Pfam: RNB OB_RNB S1
Other DBs
NCBI-ProteinID: AKJ04584
Position
7818273..7820168
AA seq 631 aa
METPSPSRTVTGRIDVHPRGFGFLVVQPSGSDEVLSAFIPPPELNPYLADDVVSATVTAS
EDGRWSASALSLLKRPRQEVYGEVVLRKGAVHLRIDRDVANGDWPLEAAGVEVQPQDAVV
ARIADGKAWLLRKLEPGADRSLERIIVRHGLRRGFDPEVHAEVQRVLTVPHALGGRRDLR
QVPTVTVDSASTRVIDDAISVLPAGGDGALRLFVSIADPAEFVTEGSALDRVARERATSV
YLAGAMLPMLPEELSTNWLSLVPGEDRLCLTVELRIDPEGRVTAADVYESLIRSWAKLSY
AEVADYLDKDEVSEPMAAVREAMPWFRAAAARLAVARAGRGGIEMSRDEARFTFDEETGE
VSGIEAVRPTTAHTMVERFMVAANEAIAGWLIDRGVPALFRVQDEPEPQRVADLAAFAQH
SGFGAGFGRRLTPLALAAFDRQIAGCTAEPALRSVLRRSLGPSRYTVVPAMHFGLAARAY
LHFTSPIRRYADLSVHRALKQYLRGRRDFVHEDPAIEQLGVHLNERSRTASRAEKDRHRV
LEARVMASHVGREFTGRITRVRPSGLLVQLDGMLVEANLPADALPDGPYQPDPRETSLVS
ASRTFTIGMPLQVRVASTDEQHGRVELALAG
NT seq 1896 nt   +upstreamnt  +downstreamnt
atggaaacgccctccccctcgcgtaccgtcaccggccgcatcgacgtccaccctcgcggc
ttcggcttcctcgtcgtgcagccgtccggctccgacgaggtgctctccgcgttcatcccg
ccgcccgagctcaacccgtacctcgccgatgacgtcgtctccgcgacggtgacggcctcg
gaggatggccgctggagcgcgagcgcgctgtccctcctcaagcgcccacgccaggaggtc
tacggcgaggtggtgctgcgcaagggagccgtccacctgcgcatcgaccgcgacgtggcc
aatggcgactggccgctggaggcggccggtgtcgaggttcagccccaggacgcggtggtg
gcgcgcatcgccgacggcaaggcgtggctgctgcgcaagctggagccgggcgcggatcgc
tcgctggagcgcatcatcgtgcgccatggattgcgccgtggcttcgacccggaggtccac
gccgaggtgcagcgggtcctcaccgtgccccatgcgctcggaggccggcgtgacttgcgc
caggtgcccaccgtcaccgtggactcggcgtccacgcgcgtcatcgacgacgccatctcc
gtgctgcccgcgggtggcgacggggccctgcggctgttcgtctccatcgccgaccccgcc
gagttcgtcaccgagggctccgcgttggaccgtgtggcgcgcgagcgggccaccagcgtg
tacctcgccggagccatgctgcccatgctccccgaggagctctcgacgaactggctcagc
ctcgtgcccggcgaggaccggctgtgcctcacggtggagctgcgcatcgacccggagggg
cgcgtcaccgcggcggatgtctacgagagcctcatccgctcgtgggccaaactgagctac
gccgaggtggcggactacctcgacaaggacgaggtgtccgagccgatggccgctgtgcgc
gaggccatgccgtggttccgcgcggcggcggcacggctggcggtggcgcgggccggtcgc
ggtggcatcgagatgtctcgcgacgaggcccgcttcaccttcgacgaggagacgggcgag
gtctccggcatcgaggccgtacggcccacgacggcgcacacgatggtggagcgcttcatg
gtcgccgccaacgaggccatcgcgggctggctgattgatcgcggcgtccccgccctcttc
cgcgtccaggacgagccggagccgcagcgtgtcgcggacctcgccgccttcgcgcagcac
tcgggcttcggcgcgggcttcggccgcagactcaccccgctggcgctcgccgcgttcgac
cggcagatcgccggctgcaccgcggagccagccttgcgctcggtgctgcggcgctcgctg
gggccctctcgctacaccgtggtgccagccatgcacttcggcctcgcggcgcgcgcctac
ctccacttcacctcgcccatccggcgctatgcggacctctccgtccaccgcgccctcaag
cagtacctgcggggccggcgcgacttcgtgcacgaggaccccgccatcgagcagctcggg
gtgcacctcaacgagcgctcccgcaccgccagccgcgccgagaaggatcgccaccgcgtg
ctggaggcccgggtgatggcctcgcacgtgggccgggagttcaccggacggattacccgc
gtgcggccctctggcctgctcgtccagctcgacggcatgctggtggaggccaacctcccc
gccgacgcgctgcccgatggaccctaccagcccgaccctcgcgagacgtcgctcgtgagc
gcctcgcgcaccttcaccatcggcatgcccctgcaggtgcgcgtggcctccaccgacgaa
cagcacggccgcgtcgagctcgcgctcgcggggtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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