KEGG   Aeromonas hydrophila YL17: AI20_13090
Entry
AI20_13090        CDS       T03186                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ahd  Aeromonas hydrophila YL17
Pathway
ahd03030  DNA replication
ahd03410  Base excision repair
ahd03420  Nucleotide excision repair
ahd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ahd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AI20_13090 (ligA)
   03410 Base excision repair
    AI20_13090 (ligA)
   03420 Nucleotide excision repair
    AI20_13090 (ligA)
   03430 Mismatch repair
    AI20_13090 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ahd03032]
    AI20_13090 (ligA)
   03400 DNA repair and recombination proteins [BR:ahd03400]
    AI20_13090 (ligA)
Enzymes [BR:ahd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AI20_13090 (ligA)
DNA replication proteins [BR:ahd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AI20_13090 (ligA)
DNA repair and recombination proteins [BR:ahd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AI20_13090 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AI20_13090 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AI20_13090 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AI20_13090 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH DZR_2
Other DBs
NCBI-ProteinID: AHV36089
Position
2449476..2451482
AA seq 668 aa
MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPELKTPASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSSEELQAFEQRMSDRLKREVNFTFCCEPKLDGLA
VSLLYVDGQLVQAATRGDGTTGEEITENVRTIKAIPLTLRDEGWPARLEVRGEVFMPKAG
FEAMNARALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHYG
RLTRLNAWGLPLSPEVKLKEGAAGCQAFHDDILARRGALPYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPSDAREILFPTECPVCGSAVERLEGE
AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFGLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDVVAKHVYYFLRQPHNIEVLEALLAAGIHWPAIEKKEAAQQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITVWTEE
ELQQALQG
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgagcgatatcctctcccgccaccgtcaactgtgtgagctgcttaccgaatatgggcat
cagtactatgtgctggacaaccccacagtgccggatgccgaatacgaccgcctgatgcgc
gagctgatcgcgctggaggccgaccatcccgagctgaaaaccccggcctcgccgagcgtg
cgggtgggcggtcaaccgctcaccgccttcaagcaggtgcgccacgagatccccatgctg
agcctggacaacgtgttcagcagcgaagagctgcaggcgttcgaacagcgcatgagtgat
cgcctcaagcgggaggtcaatttcaccttctgctgcgagcccaagctggacggcctggcg
gtgagcctgctctacgtggatggccagctggtgcaggccgccacccggggcgatggcacc
acgggtgaggagatcaccgagaacgtgcgcaccatcaaggccattcccctgaccctgcgt
gacgaggggtggccggctcggctggaagtgcgcggcgaggtcttcatgcccaaggcgggg
ttcgaggcgatgaacgccagggcgctggccgccggcgagaaggtattcgtcaatccgcgc
aacgccgccgccggcagcttgcgccagctcgattcacgcatcaccgccagccgcccgctc
agcttctacgcctatggggtgggggtcggtggcgagctgctgggggattcccactacggc
cgcctcacccggctcaatgcctgggggctgccgctcagcccggaggtgaagctcaaggag
ggggctgccggctgtcaggcgttccatgacgacatcctggcccgccgtggcgcactcccc
tacgagatcgatggcgtggtctacaaggtggatgccattcccctgcaagaggagctcggc
ttcgtggcccgtgcgccgcgctgggccaccgcccacaagttcccggcccaggaggagatg
accctgctcgaaaacgtcgagttccaggtcggtcgcaccggcgccgtgaccccggtggcc
aagctcaaacctgtgttcgtcggcggcgtcaccgtctccaacgccaccctgcacaatgcc
gacgagattgagcgcctcggcgtcatgatcggcgacaccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatcgtggcggtggtggaggcccagcgtccaagcgatgcccgtgaa
attctgttcccgaccgagtgcccagtgtgcggctcggcggtagagcggctggaaggggag
gcggtgacccgctgctccggaggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcccgccgcgccatggacgtggacggcctcggcgacaagatagtggagcag
ttggtggacaaggggctggtgaagaccccggccgatctgtttggcctcaatgccatccag
ctggccgggctcgagcggatggggcaaaagtccgccctcaatctggtggcggccatcgat
gctgcccgcagcaccacgctgccgcgcttcctgtttgcgctggggatccgcgaagtgggg
gaggcgactgcgctgaacctcgccaaccacttcctcactctggacgccctgcgtgccgcc
tcggtggagcagctgctggaagtggccgacgtgggggacgtggtggccaagcatgtctac
tacttcctgcgccagccccacaatatcgaggtgctggaggcgttgttggccgccggtatc
cactggcccgccatcgagaagaaggaggccgcacagcagccctttgccggcaagaccttc
gtgctgaccggcaccctcaccaccttgtcgcgcaacgacgccaaggcggcgctgcaggcg
ctcggcgccaaggtggctggctcggtatcggccaagactgacgtgctggtggccggtgag
gcggcgggctccaaactggccaaggcccaggagcttggcatcaccgtctggaccgaagag
gagttgcagcaggcgctgcagggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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