KEGG T03186: AI20

Aeromonas hydrophila YL17: AI20_15820

Entry

AI20_15820        CDS       T03186

Name

(GenBank) exoribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

ahd Aeromonas hydrophila YL17

Pathway

ahd03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:ahd00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AI20_15820
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ahd03019]
    AI20_15820
   03016 Transfer RNA biogenesis [BR:ahd03016]
    AI20_15820
Enzymes [BR:ahd01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AI20_15820
Messenger RNA biogenesis [BR:ahd03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AI20_15820
Transfer RNA biogenesis [BR:ahd03016]
Prokaryotic type
  tRNA degradation factors
   AI20_15820

SSDB

Motif

Pfam:

RNB CSD2 OB_RNB HTH_12 S1 RNase_II_C_S1 Dimerisation

Other DBs

NCBI-ProteinID:

AHV36590

Position

1862224..1864617

AA seq 797 aa
MSQKDPFLEREAEKYENPIASRELILDLIKGHEKPMSREELAKVLKLTEEEPLEALRRRL
RAMERDGQLVFTRNQCYALPDRLNLVKGYVLGHKDGFGFLRPEGGGPDLFLNNREMQRLM
HGDYALVQPTEIDRKGRQEARLVRLLKAREADIVGRYFVENGVGFVVPDDSRIGQDIIIP
EGENKGARQSQVVVVRINQRATARFNAVGTVLEVLGENMAPGMEIEIALRTHGIPHTWPE
EVTKEVAGLGEQVPEKAKEGRIDLRALPLVTIDGEDARDFDDAVFCEAKRGGGWRLWVAI
ADVSAYVKPGTALDTEAYQRGNSVYFPEFVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SAAGRMSGYKFYEAVMNSHARMTYTKVAAILDGDPKLRQQYEPLVGHIEELNNLYKALKY
ARHQRGAVEFESEETRFIFNAQRKIDRIVPLVRNDAHKIIEECMIQANVAAARYIEKNEA
AALFRVHDRPGEERLTGFRDFLAELGLELKGGLEPEPKDFADLAAKFEGRPDAELLSTML
LRSMRQAIYQADNIGHFGLALKSYAHFTSPIRRYPDLILHRAIKYQTAKEQQGNLRHKWT
PSGGYHYQLEEVDPMGEHCSMTERRADDATRDVADWLKCEYMLDHVGDEFDGVIASVTGF
GFFVRLAEIHIDGLVHVSTLTNDYYQFDPLHQQLIGENFRRRYRLGDKVRVKVMGVNLDD
RKIDFVMVEEPLKITGKNAKQAVRKMAEIKKEKAKSAERHDKRKEKEGKEHGKSAKGGRA
KPSNRRPSKKARDKAKG

NT seq 2394 nt +upstreamnt +downstreamnt
atgtctcaaaaagatcctttcctcgaacgcgaggccgaaaaatacgagaatccgatcgcc
agtcgcgagctgatcctcgacctcatcaagggccatgaaaagcccatgtcccgtgaagag
ttggccaaggtcctcaagctgaccgaagaagagccgctggaagccttgcgtcgtcgtctg
cgcgccatggagcgcgacggtcaactggtcttcacccgcaaccagtgttacgccctgccg
gatcgcctgaatctggtcaaaggctatgtgctcggccacaaggatggcttcggtttcctg
cgtcccgagggtggtggcccggatctgttcctgaacaaccgcgagatgcagcgcctgatg
cacggcgactacgccctggtgcagcccaccgagatcgaccgcaagggtcgccaggaggcg
cgtctggtgcgtttgctcaaggcccgcgaggcggacatcgtcggtcgctatttcgtcgag
aacggcgtcggtttcgtggtacccgacgacagccgcatcggccaggacatcatcatcccg
gaaggggagaacaagggggctcgccagagccaggtggtggttgtgcgcatcaaccagcgc
gccaccgcccgcttcaatgcggtcggcaccgtgctggaagtgctgggtgagaacatggca
cccggcatggagatcgagattgccctgcgtacccacggcatcccgcacacctggcccgag
gaggtgaccaaagaggttgctggtctcggcgaacaggtgccggagaaggccaaagagggt
cgcatcgacctgcgtgccctgccgctggtcaccatcgacggggaagatgcccgcgacttc
gatgacgccgtcttctgtgaagccaagcgcggtggcggctggcgcctgtgggtcgccatt
gccgacgtctcagcctatgtgaagccgggcaccgccctcgacaccgaggcctaccagcgc
ggcaactccgtctacttccccgaattcgtggtgcccatgctgccagaggtgctctccaac
ggcctctgctcactcaacccacaggttgaccgcctctgcatggtgtgcgagatgaccatc
tccgccgccggccgcatgtccggctacaagttctacgaagcggtgatgaactcccacgcc
cgcatgacctacaccaaggtggcggcgatcctggatggcgatcccaagctgcgccagcag
tacgagccgctggtgggccacatcgaggagctcaacaacctctacaaggcgctcaagtat
gcccgccatcagcgcggtgcggtggagttcgagagcgaagagacccgcttcatcttcaac
gcccagcgcaagatcgaccgcatcgtgccgctggtgcgcaacgacgcccacaagatcatc
gaagagtgcatgatccaggcgaacgtggctgccgcccgctacatcgagaagaacgaggcc
gccgccctgttccgggtgcacgaccgcccgggtgaagagcgcctcaccggcttccgtgac
ttcctggccgagctgggcctggagctcaaggggggcctggagcccgagccgaaagacttt
gccgacctggccgccaagtttgaagggcgcccggatgcggagctgctctccaccatgttg
ctgcgctccatgcgtcaggccatctatcaggccgacaacatcggccacttcggtctggcg
ctgaagtcctatgctcacttcacctcgccgatccgtcgctatcccgacctcatcctgcac
cgggcgatcaagtatcagaccgccaaggagcagcagggcaacctgcgccacaagtggact
ccgagcggtggctaccactaccagctggaagaagtggatccgatgggcgagcactgctcc
atgaccgagcgccgcgccgatgacgccacccgcgacgtggccgactggctcaagtgcgag
tacatgctggatcacgtgggtgacgaattcgacggcgtcatcgccagcgtcaccggcttt
ggcttcttcgtgcgtctggccgagatccacatcgacggtctggtgcacgtcagcaccctc
accaacgactactaccagttcgacccgttgcaccagcagctgatcggcgagaacttccgc
cgccgctaccgtctgggtgacaaggtgcgggtcaaggtgatgggcgtgaacctggacgat
cgcaagatcgacttcgtgatggtggaagagcccctcaagatcaccggcaagaacgccaag
caggcggtgcgcaagatggccgagatcaagaaggagaaggccaagagcgccgaacgccac
gacaaacgcaaagagaaagagggcaaggagcacggcaaatccgccaagggcggccgtgcc
aaacccagcaacagacgaccgagcaaaaaagcgcgcgacaaggccaaggggtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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