KEGG   Pseudalgibacter alginicilyticus: APS56_07200
Entry
APS56_07200       CDS       T04100                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ahz  Pseudalgibacter alginicilyticus
Brite
KEGG Orthology (KO) [BR:ahz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ahz03032]
    APS56_07200
   03400 DNA repair and recombination proteins [BR:ahz03400]
    APS56_07200
Enzymes [BR:ahz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     APS56_07200
DNA replication proteins [BR:ahz03032]
 Prokaryotic type
  DNA Topoisomerases
   APS56_07200
DNA repair and recombination proteins [BR:ahz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      APS56_07200
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim RP-C Toprim_4 Toprim_3
Other DBs
NCBI-ProteinID: ALJ04920
UniProt: A0A0P0DAM5
Position
complement(1732079..1734571)
AA seq 830 aa
MAKNLVIVESPAKAKTIEKFLGKDFKVESSFGHIADLPSKELGVDVDGDFKPKYEVSTDK
KTVVKKLKDLAKKAETVWLASDEDREGEAIAWHLAETLKLDKNKTKRIVFHEITKTAIQK
AIENPRGIDYDLVDAQQARRVLDRIVGYELSPVLWRKVKGGLSAGRVQSVSVRLIVEKER
DIQNFEAVASYRIDAEFSNEDGQTFKAKLPKNFSTKEEAQKFLEQNANADFKVSDLEKKP
AKKSPAAPFTTSTLQQEASRKLYFSVSKTMTMAQRLYEAGLITYMRTDSVNLSDEARKGA
EAEIKDAYGAKYSKPRNYKGKAKGAQEAHEAIRPTNFATHSVDIDRDQARLYDLIWKRAI
ASQMSEAELERTNVKVSASTHKELFTANGEVITFDGFLKVYLEGSDDEDEEQDGMLPAMK
VNEKLLNSYITATERYTRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNRNYVEKGS
VDGEERTYSQLTLQNGIVKNRALTEKVGSDKGKLVPTDIGMIVTDFLVNHFDAILDYNFT
AKVEADFDEIAEGKEDWTKMMKSFYKNFHPVVVDVQENADRESGERILGKDPKSGKQVSV
RLGRFGPMVQIGTVDDEEKPQFASLSPDQQLTTITYEEAMDLFQLPKNLGVYKDQDIEVN
NGRFGPYVKFGDTFVSLPKGVDPLSVELDDAIVLIKEKEKADAPIYMYNDLPVQKGKGRF
GPYIKWNNMFINVNKKYDWDDLSDDDIVELIETKIQKEIDKVVHNWEDEGIRVEKARWGR
HNIIKGKVKIELPKTVDAVKLTLEEVKGLIEKNAPKKKTTKRKTPVKKKK
NT seq 2493 nt   +upstreamnt  +downstreamnt
atggcgaagaatttagtgatagtagagtcaccagcaaaagcaaaaaccattgaaaaattt
ctaggaaaagattttaaagtagaatctagtttcggtcatatagccgatttgccttcaaag
gaattgggagtagatgttgatggcgattttaaaccaaaatatgaagtttccaccgataaa
aaaacagtcgtaaaaaaactgaaagacttagctaaaaaggccgaaacggtttggttagca
agtgatgaggatcgagaaggagaggctatagcatggcacttggcagaaactttaaaattg
gataaaaacaaaactaagcgtattgtttttcatgaaattactaaaacggctattcaaaaa
gcgattgaaaatccaagaggtattgattacgatttggtagatgcgcagcaagcgcgtcgt
gttttagacagaattgttggttatgagttgtcgcccgtattatggagaaaggtgaaagga
ggtttgtctgcgggtcgtgtacagtctgtttctgtaagattaattgttgagaaagaacga
gatattcaaaattttgaggcagtagcttcttatagaatagatgctgagttttcaaatgaa
gatggtcaaactttcaaagccaaacttcccaaaaatttttcaactaaagaagaagctcaa
aaatttttagagcaaaatgcaaatgctgattttaaagtttcagatttagagaaaaaacct
gctaaaaaatcgccagcagcaccgtttacaacttctacattacaacaagaagcatcacgc
aaattgtatttttcagtaagcaaaaccatgactatggcccagcgcttatatgaggcagga
ttaattacttatatgagaactgatagtgttaatttatctgatgaagccagaaaaggtgcc
gaagcagaaattaaagatgcttacggtgctaaatatagtaagccaagaaactataaaggt
aaagctaaaggtgctcaagaggcgcatgaggctattcgtcctacaaattttgcaacacat
tcagtagatattgatagagatcaagcacgcttatatgatttaatttggaaacgtgccatt
gcatcgcaaatgagtgaagctgagttagagcgtaccaatgttaaagttagcgcatcaaca
cataaagagctttttactgcaaacggagaggttatcacttttgatggatttttaaaagtg
tatttagagggaagtgatgatgaagatgaagagcaagacgggatgctgccagctatgaaa
gttaacgaaaaacttcttaatagttacattacagcaacggagcgctacacgcgaccgcca
gcaagatacacagaggcttctttggttaaaaaattggaagaattaggcattggacgtccg
tctacttatgcgccaactatttctaccattcaaaatagaaattatgttgaaaaaggttct
gtagatggagaagaacggacttattcacaattaactttacaaaacggtattgttaaaaac
agggcgttgactgaaaaagtagggtctgataaaggtaagttagtaccaacagatattggg
atgattgtaacagattttttggttaatcattttgatgctattttagattataattttaca
gcaaaggttgaagctgattttgatgaaatagctgaagggaaagaagattggactaagatg
atgaaatcgttttataaaaatttccacccagtagtggttgatgttcaagaaaatgcagac
agggaatctggtgagcgtattttaggaaaagatcctaaatcaggaaaacaagtcagtgtt
cgtttaggtagatttgggccgatggtacaaataggaacagtggatgatgaagaaaaacct
cagtttgctagtttaagtccagaccaacaattaacgactataacttatgaggaagctatg
gatttatttcaacttccaaaaaatcttggggtgtacaaggatcaagatattgaagtaaat
aatggtcgttttggtccttatgttaaatttggagatacttttgtgtccttaccaaaaggt
gtagatccactttctgtagaattggatgatgctattgttttaattaaagaaaaagaaaaa
gcagacgctcctatatatatgtataatgatttgcctgttcaaaaaggtaaaggtcgattt
ggtccttatataaaatggaataatatgtttattaatgtcaataaaaaatatgattgggat
gatttatccgatgatgatattgttgaattgatagaaacaaaaattcaaaaagaaatagat
aaagtagttcataattgggaagatgaaggtatccgtgttgaaaaagcacgttggggacga
cacaatattataaaagggaaagtaaaaattgaattacctaaaacggtagatgctgttaaa
ttaactttggaagaagtaaaggggttaattgagaaaaacgcacccaaaaagaaaacaact
aagcgaaaaacgcctgttaaaaagaaaaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (104)   
   KEGG ORTHOLOGY (1)   
   RefGene (101)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (117)   

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