KEGG   Acidaminococcus intestini: Acin_2139
Entry
Acin_2139         CDS       T01639                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ain  Acidaminococcus intestini
Pathway
ain03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ain00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Acin_2139 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ain03021]
    Acin_2139 (rpoB)
   03400 DNA repair and recombination proteins [BR:ain03400]
    Acin_2139 (rpoB)
Enzymes [BR:ain01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Acin_2139 (rpoB)
Transcription machinery [BR:ain03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Acin_2139 (rpoB)
DNA repair and recombination proteins [BR:ain03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Acin_2139 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 DUF5887 DUF2171
Other DBs
NCBI-ProteinID: AEQ23339
UniProt: G4Q5P3
Position
complement(2154345..2158004)
AA seq 1219 aa
MPHLIDLQRKSYEWFIREGLHDAFQDVSPIKDATNSLELSFENFTIGDPKYDIETCKEKD
ATYAAPLNVDVRLLYKDTGEIKESTVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPGVY
YAKDMDPMGKFLYGTTVIPNRGAWIEYETDLNSIIYARVDRTRKLSATALLRVMGLPTND
DIISVFGEHPYLVATLAKDTTKNEDDALLEIYRKLRPGEPANLENAEQLIYNLFSDNRRY
DLANVGRYKINKKLGWRHRLHGKTLAEDLCAENPDGTKGAVVLPAGTKIGDAEIDTIEKS
GIFADEGYAIVYVKFQEHAERMIVTKDIEASVRTITPADVIASFGYLLNVIDGMEGKDDI
DHLGNRRVRCVGELLQNQFRIGLSRMERVIRERMTIQDADVITPQALINIRPVVAAVKEF
FGSSQLSQFMDQNNPLAELTHKRRLSALGPGGLSRERAGYEVRDVHPSHYGRMCPIETPE
GPNIGLIGSLAAYGVINRYGFIETPYRKVDKVNKRVTDEIVYLTADEEDNYVVAQANEPL
TEDNHFVNTHVTCRDKNEVLAIPPERVDFMDVSPKQVMSIAAALIPFLENDDANRALMGA
NMQRQAVPLLNPKAPVVGTGMEYKIAVDSGVCILAKHAGTVKYVSGDKILITRDDGKGID
EYNVLKFKRSNQSTCVNQRPIVFKGDKVEEGQVLADGPATDHGELALGRNAIAAYMPWEG
YNYEDAVLLSEDLVKEDVFTSIHIEEYNCDARDTKLGPEEITRDIPNVSEDALKDLDEDG
IIRVGAEVRPGDILVGKVTPKGETELSAEERLIRAIFAEKAREVRDSSLRVPHGEFGIII
SVKVFTRENGDELPPGVNKQVRVSIVQKRKIGEGDKMAGRHGNKGVVSRILPREDMPFLP
NGEPVQIVLNPLGVPSRMNIGQILEAHLGWAATALGMRIDNHDPNVEADLRKAGYDFDEL
GMPETVDGAVPVAVPVFDSARQDDMARTLEAAGVDPSGKTVLYDGRTGEPFDNPVTVGCI
YYLKLHHLVADKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEI
LTVKSDDVVGRVKAYESIVKGENIPEPGVPESFKVLVKEMQAIGLDVSVLDEDDEEIDLD
DEDEDIGMGDIARELDMDMSGKVSTAANTGEQAQNRANSDEEVSPDEDQTEDSDFDVIAD
IGNMGMDDSQGDDNGSDEE
NT seq 3660 nt   +upstreamnt  +downstreamnt
atgccgcatctgattgacttgcagagaaaatcctatgagtggttcatcagggaaggactt
catgacgcgttccaggacgtatcgcctatcaaggatgctacaaacagcctggaactgagt
ttcgagaattttaccatcggcgatccgaagtatgatatcgaaacttgcaaggaaaaagat
gcaacctatgcggctcctttgaacgtagacgtccgtctgctttataaagatacgggcgaa
atcaaggaatcgactgtctttatgggcgatttcccccttatgaccgatacggggaccttc
gtcatcaatggggcagaacgtgtcattgtcagtcagcttgtccgcagccctggcgtctat
tatgccaaggatatggatccaatgggtaagttcctctacgggaccacagtcatcccgaac
cgcggggcctggattgaatatgagaccgaccttaacagcatcatctatgcccgtgtggac
cggacgcgcaaactgtctgctacggccctcctgcgtgtcatgggtctgccgacaaatgat
gatatcatcagcgtctttggtgagcatccttacctggttgctacccttgccaaggacaca
acgaaaaatgaagatgatgcccttctggaaatctatcggaagctgcgtccgggtgaacct
gctaaccttgaaaacgctgaacagctcatctataaccttttctccgacaatcgccgctat
gatctggcaaatgtcggtcgttacaaaatcaataagaaattgggctggcgtcatcgtctt
catggcaagacccttgctgaagacctgtgcgctgaaaaccccgatggcacgaaaggtgcc
gtggtccttcctgcagggacgaagattggcgatgccgaaatcgataccatcgaaaagagc
ggtatctttgccgatgagggctatgccatcgtctatgtcaagttccaggaacatgcagaa
cgcatgattgtaacgaaggatattgaagcgtccgtacgcaccatcacgccggctgatgtc
attgcttcctttggctatctcctgaatgtcattgatggcatggaaggcaaggatgatatc
gaccatctgggcaaccgtcgtgtccgctgcgttggcgaactcctgcagaaccagttccgc
attggactgtcccgtatggaacgtgtcatccgtgaacgcatgaccatccaggatgctgac
gtcatcaccccgcaggcccttatcaacattcgtccggtcgtagcggctgtgaaggaattt
ttcggcagcagccagctgtcccagttcatggaccaaaacaacccgcttgccgaactgacg
cataaacgccgtctgtccgccttgggacctggcggtctttcccgtgaacgtgccggctat
gaagtccgtgacgtccatccttcccattatggccgtatgtgcccaattgagacccctgaa
ggtccgaacatcgggctcatcggttccctggctgcctatggcgtgatcaaccggtatggt
ttcattgagaccccatatcgcaaggtcgataaagtcaataagcgtgttaccgatgaaatc
gtctatctgaccgctgacgaagaagataactatgttgttgcccaggccaacgaaccgctg
accgaagacaaccattttgtgaatacccacgtcacctgccgcgataagaacgaagtcctt
gcgattccgccggaacgtgttgacttcatggacgtttcgccaaaacaggttatgtccatt
gcagctgccctgattcctttccttgaaaacgacgacgccaaccgtgccctcatgggtgcg
aacatgcagcgtcaggctgtacctctgctcaatccgaaggcgccagtcgttggtacgggg
atggaatataagatcgctgttgactccggtgtctgcatcctggctaagcacgctggtacg
gtcaagtatgtcagtggtgacaagatcctcatcactcgtgatgatggaaaaggcatcgat
gaatacaatgtcctgaaattcaaacgttccaaccagagtacctgtgtcaaccagcgcccc
attgtctttaagggcgataaggtcgaagaaggtcaggtccttgctgatggaccggcaaca
gatcacggcgagcttgcccttggccgcaacgccattgctgcctatatgccttgggaaggc
tacaactacgaagacgccgtcctcctcagcgaagacctcgtcaaggaagatgtctttacc
tccatccatattgaagaatataactgcgatgcccgcgatacgaaactgggaccggaagag
attacccgcgatatcccgaacgtttctgaagatgccctgaaggacctcgacgaagacgga
atcattcgtgtcggtgctgaagtccgtcctggcgatatcctcgtcggcaaagtcacgccg
aaaggggaaacggaactttctgctgaagagcgcctcatccgtgccatctttgctgaaaag
gcacgggaagtccgtgacagctccctccgtgttcctcatggggaattcgggatcattatt
tccgtcaaggtctttacccgtgaaaacggcgatgaactgccgcctggcgtcaataagcag
gttcgtgtcagcatcgttcaaaaacgtaaaatcggcgaaggcgataagatggcaggccgt
cacgggaacaaaggtgttgtttcccgcatcctgccgcgcgaagatatgccgttcctgcct
aatggcgaaccggtccagatcgtactgaaccccttgggcgtaccgagccgtatgaatatt
gggcagattcttgaagcccatctgggctgggcggcaaccgcgctgggcatgcgtattgac
aaccatgaccccaacgtcgaagcagacctgcgcaaagcgggctatgatttcgatgaactg
ggcatgccagaaacggtggatggcgctgttcctgtcgcggtcccggtctttgactcggct
cgccaggatgatatggcccgtaccctcgaagcggctggcgtcgatcccagcggcaagaca
gtcctttatgatggccgtaccggggaaccgtttgataaccctgttaccgttggctgcatc
tactacctcaagcttcaccatctggttgctgataagatccatgcccgttctaccggtccg
tactccctggttacccagcagccgcttggtggtaaggcgcagttcggtgggcagcgtttc
ggtgaaatggaagtgtgggccctcgaggcttatggcgctgcctataccctccaggaaatc
ctgaccgtgaagtctgacgatgttgtcggacgtgtaaaggcttatgaatccatcgtcaag
ggtgaaaatatccctgaaccgggtgtccctgaatctttcaaggtccttgtcaaggaaatg
caggcaatcggtcttgatgtaagcgtcctcgatgaagatgatgaggaaatcgatcttgat
gatgaggatgaagatattggaatgggcgatattgcccgcgagcttgacatggatatgtcc
ggcaaggtctccacggctgccaacaccggggaacaagcccaaaaccgcgccaatagcgac
gaagaagtgagccccgatgaagaccagacggaagacagcgattttgatgtcattgccgat
atcggcaacatgggaatggatgattcccaaggcgatgacaacggctctgatgaagagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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