KEGG   Amycolatopsis japonica: AJAP_18595
Entry
AJAP_18595        CDS       T03225                                 
Symbol
ligA1
Name
(GenBank) DNA ligase 1
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
aja  Amycolatopsis japonica
Pathway
aja03030  DNA replication
aja03410  Base excision repair
aja03420  Nucleotide excision repair
aja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AJAP_18595 (ligA1)
   03410 Base excision repair
    AJAP_18595 (ligA1)
   03420 Nucleotide excision repair
    AJAP_18595 (ligA1)
   03430 Mismatch repair
    AJAP_18595 (ligA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aja03032]
    AJAP_18595 (ligA1)
   03400 DNA repair and recombination proteins [BR:aja03400]
    AJAP_18595 (ligA1)
Enzymes [BR:aja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AJAP_18595 (ligA1)
DNA replication proteins [BR:aja03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AJAP_18595 (ligA1)
DNA repair and recombination proteins [BR:aja03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AJAP_18595 (ligA1)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AJAP_18595 (ligA1)
   MMR (mismatch excision repair)
    DNA ligase
     AJAP_18595 (ligA1)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AJAP_18595 (ligA1)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 HHH_2 BRCT HHH DNA_ligase_ZBD RNA_ligase IclR PTCB-BRCT
Other DBs
NCBI-ProteinID: AIG76585
UniProt: A0A075V1U5
Position
complement(3936902..3938893)
AA seq 663 aa
MNARDRIQELADQIVVLRDAYYRGSPKVADADYDAIEDELRGLIEANPELAPEPNPLDQV
GAPAVLHAPIRHSRPMLSLEKATKPEQVEAFFARFPGQPVVVMPKLDGLSLALVYENGRL
ARAVTRGDGTTGDDVTMLVRALTDGVPDKVDAPGRVEVRGEAVMLRSTFAAYNKVHPDKP
LINPRNAAAGTLRAKDPATVAERRLQFFAFDLSTEPDSAETDLDGALRTLGFAAADMRHC
EDAESAQAVITTIEQQRNDLDYDLDGAVLRLADRDAYAAAGTRSSSPRGALAFKFAAEEK
TTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIKARGIKIGDTVLVRRA
GDVIPFVAGVLDAAKRTGEEREIVPPSVCPSCEEPLTEQGNSRELFCTNVACPAQTVRRL
IHWASRAAADIDAIGGVWIERLAEAGILEHPSDFYRLTKERLLEFDRIGDISATRMIESI
NASRAVGLRRALIGLAIPMASEGTAARLCRAGFGSLEAVVDAGEEGLVAVEDIGPKVAAS
LIEHLTRLRPELERLREVGVSLDVREEDLPPVVAAGAPLEGKTVVVTGSISDPRSGEKVP
RPTFQRLCEKAGATIASSVSANTDLLITGADVGASKLTKAEKLEVEVVDQGVIWGQLIEA
GVV
NT seq 1992 nt   +upstreamnt  +downstreamnt
gtgaacgctcgggaccgcatccaagaactcgccgatcagatcgtcgtccttcgcgacgcc
tactaccggggctcgccgaaggtggccgacgccgactacgacgcgatcgaagacgaattg
cgcgggctcatcgaggcgaatcccgagctcgccccggagccgaacccgctcgaccaggtc
ggcgcgcccgccgtcctgcatgcgcccatccgccactcgcggccgatgttgtcgctggag
aaggcgaccaaaccggagcaggtcgaggcgttcttcgcccggttccccgggcagccggtg
gtcgtcatgccgaagctcgacggtctgtcgctcgccctcgtctacgagaacggccgcctc
gccagggcggtcacccgcggcgacgggaccacgggcgacgacgtgaccatgctggtccgg
gcgctgaccgacggcgtcccggacaaggtcgacgccccaggccgggtcgaggtccgcggc
gaggccgtcatgctgcgttccactttcgccgcctacaacaaggtccacccggacaagccg
ctgatcaacccgcgcaacgccgccgcgggcaccctgcgcgcgaaggatccggccaccgtc
gccgaacggcggctgcagttcttcgcgttcgacctctccacggagcccgacagcgcggaa
accgatctcgacggcgcgctgcggacgctcgggttcgccgccgccgacatgcggcactgc
gaagacgccgagtcggcgcaggccgtcatcacgaccatcgagcagcagcgcaacgatctc
gactacgacctcgacggtgcggtgctgcgcctggcggatcgcgacgcgtacgccgccgcc
ggaacgcggtccagttcaccgcgcggggcgctggccttcaagttcgccgccgaggagaag
accaccgtgctcgccgatgtcgtctgggacgtcggcaagaccggcaagatcgcgcccgtc
gcgtggctggagccggtgttcgtcggcgggaccaccgtcacgcgggcgacgttggccaac
caggaggtcatcaaggcccgcgggatcaagatcggcgacaccgtgctggtgcggcgtgcc
ggcgacgtgatcccgttcgtggccggtgtcctcgacgccgccaagcggaccggcgaggag
cgggagatcgtgccgccgtcggtgtgcccgtcgtgtgaagagccgctgaccgaacagggc
aacagccgggaactgttctgcaccaacgtcgcctgtcccgcccagaccgtccggcggctg
atccactgggcgtcgcgcgcggccgccgacatcgacgcgatcggcggcgtctggatcgag
cggctcgccgaggccgggattctcgaacacccgtcggacttctaccggctcaccaaagaa
aggctgctggagttcgatcgcatcggcgacatctccgccacccgcatgatcgagtcgatc
aacgcgagccgggccgtcggcctgcgccgcgcgctgatcggtctcgcgatcccgatggcc
tccgaaggcaccgccgcgcggctgtgccgggccgggttcggttcgctggaagccgtcgtg
gacgcgggcgaagaggggctcgtcgccgtcgaggacatcggtccgaaggtcgccgcgtcc
ctgatcgagcacctcacccgcctccgtcccgagctcgagcggctgcgcgaagtcggagtc
tcactggacgtgcgtgaagaagacctcccgccggtcgtcgcggcaggcgccccgctggaa
ggaaagacggtcgtcgtcaccggatcgatcagcgacccgcgctccggtgagaaggtgccg
cgcccgaccttccagcggctgtgcgaaaaggcgggcgcgaccatcgcgtcgtcggtctcg
gcgaacacggacctgctcatcaccggcgcggacgtcggcgcgagcaagctcaccaaggcc
gaaaagctcgaagtcgaggtcgtggaccagggcgtgatctggggccagctgatcgaggcc
ggcgtcgtctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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