KEGG   Amycolatopsis japonica: AJAP_33960
Entry
AJAP_33960        CDS       T03225                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
aja  Amycolatopsis japonica
Pathway
aja03420  Nucleotide excision repair
aja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AJAP_33960
   03430 Mismatch repair
    AJAP_33960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aja03400]
    AJAP_33960
Enzymes [BR:aja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AJAP_33960
DNA repair and recombination proteins [BR:aja03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AJAP_33960
   MMR (mismatch excision repair)
    Other MMR factors
     AJAP_33960
SSDB
Motif
Pfam: UvrD-helicase UvrD_C PDDEXK_1 AAA_19 UvrD_C_2 AAA_30
Other DBs
NCBI-ProteinID: AIG79600
UniProt: A0A075V9S6
Position
complement(7299203..7302460)
AA seq 1085 aa
MISELQRRQVEPGEIARALGLHSPTDEQAEVIAAPIEPSLVVAGAGAGKTETMAARVVWL
VANSVVPPERVLGLTFTRKAARQLGERVRTRLRRLVGSGLLDKIDPTGDLRTTVTAGEPT
VLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQFSHRVVSTWDNDLDTDRVPSTVTAQ
LLALAGELGEHLVETERLAQYTSWLCEVIENAPRAKGQRASLPQKLAEVMTAQRFRLALL
PLVEAYHTRKRAEGALDFADQMSLAAQLASSYPAVVAGERERYGAVLLDEYQDTGHAQRI
LLRSLFGGVEHPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRDNGERLVPALDFGL
LTSFRNPPEVLELANAISEPLRERGLGVARLRALEGAGAADIAAALLPDIRAEREWVADA
VAKRWFETVEETGKPPTAAVLVRRRADMAPIAAELRARGLPVEVVGLGGLLDEPEVADLV
STLRVLADPLAGSAAARLLTGARWRIAAADLAALWRRAGELSSPVPPSGKSDVDEPVLVT
ERVEQAGLADAIDDPGTPERYSSEGYRRIRKIGAELSALRRRLDQSLPELVADVERTMLL
DVESLARPGPAGRAHLDAFADVVTDFAETSPTATLLSFVDYLNTAAHAEDGLTPGEVEVV
PDRVQVLTVHSAKGLEWRIVAIPHLVKEVFPGRRRSSSWLRTSTSLPAALRGDSEDLPEL
RIPEGADRKEVQEALELHEEGFVAREADEERRLCYVALTRSEHTMLISGHWWNESSARPK
GPSEFLLEIGEVMRGNSVGRIEPWADEPETDGENPLVADARRSRWPVDPLWPRREGVTNG
VDMVLGAMEDAEHAEEEEEDDPDGWISDTKVLLEERARARDRVQQVVLPPHLSVSQLVEL
SADPAALAKRLRRPLPVRPNTYARRGTAFHGWLEQRFGGEQLLEIHDLPGAADVDEAPDT
ELEALQTAFEKSEWAHRVPHAVEVPFSADVVGVTVRGRMDAVFADADGGWTVVDWKTGAV
PEADRVESLAVQLAAYRLAWAALKNIPVEKVRAAFHYVKHDKTVRPADLLDAEGLRRLLR
SVPTI
NT seq 3258 nt   +upstreamnt  +downstreamnt
ttgatctccgaactccagcgccgccaggtcgaaccgggcgagatcgcccgcgcgctcggc
ctgcacagccccaccgacgagcaggccgaggtcatcgcggcacccatcgagccgtcgctg
gtcgtcgcgggcgcgggcgcgggcaagaccgagacgatggccgcgcgcgtcgtctggctg
gtggccaacagtgtcgtgccgccggaacgcgtgctcggcctgaccttcacccgcaaggcc
gcccgtcagctcggcgaacgcgtccgcacccggctgcggcggctcgtgggatcgggactg
ctcgacaagatcgacccgaccggtgatctgcgcacgacggtgaccgccggcgagccgacg
gtgctgacctatcacgcgtatgccgggcggctgctgtccgaacacggcctgcggctgccc
gtccagcccggcgtccggctgctgtcggagacgtcttcgtggcagttctcgcatcgcgtc
gtgtccacttgggacaatgacctcgacaccgatcgcgtgccctcgacggtgacggcgcag
ttgctggcgctggccggggaactcggcgaacacctcgtcgagaccgaacggctggcgcag
tacacgtcttggctgtgcgaggtcatcgagaacgcgccgagggcgaaagggcagcgtgct
tctctgccgcagaagctggccgaagtcatgacggcgcaacggttccgcctcgcgctcctg
ccgctggtcgaggcgtatcacacacggaaacgagcggaaggcgcgctcgacttcgccgac
cagatgtcgctggccgcgcagctcgccagcagctatccggcggtggtcgcgggggagcgc
gaacgctacggcgccgtcctgctcgacgagtaccaggacaccgggcacgcccagcggatc
ctgctgcgttcgctgttcggcggggtggaacatccgccgatgccggtgaccgcggtcggc
gatccggcgcaggccatctacggctggcgcggcgcgagcgcggcgaacctgccccggttc
accacggacttcccgcgtgacaacggcgagcggctcgttccggccctggatttcgggctg
ctgaccagcttccgcaatccgcccgaggtgctcgaactcgcgaacgcgatctcggagccg
ctgcgggaacgcggcctcggtgtcgcgcggctgcgcgcgctggagggcgcgggggccgcc
gacatcgccgccgcgctgctgccggacatccgcgccgaacgcgagtgggtggccgacgcg
gtggcgaaacgctggttcgaaaccgtggaggagaccggaaagccaccgaccgcggcggtt
ctggtgcgtcgtcgtgccgacatggcgccgatcgcggcggagctgcgagcgcgtgggctt
ccggtggaggtcgtcggtctcggcggcctcctcgacgaacccgaggtcgcggatctggtg
agcacgttgcgagtgctcgccgatccgctcgcgggcagcgctgccgcccggctgctgacc
ggggcgcgctggcggatcgcggcggccgacctcgcggcgttgtggcgccgggccggtgaa
ctctcgtcgccggtgccgccgtcggggaagtccgatgtggacgaaccggtgctggtgacc
gagcgggtcgagcaggcgggactcgccgatgccatcgacgatcccgggacgccggaacgc
tattcgtccgagggataccggcgtatccggaagatcggcgccgagctttcggcgttgcga
cggcggctcgaccaatcgctgcccgaactggtcgccgacgtggaacgcacgatgctgctc
gacgtcgagtcgctggcccgtcccggcccggccgggcgcgcgcacctggacgctttcgcc
gacgtcgtcacggatttcgccgagacctcgccgacggccacgcttttgtcctttgtggac
tatctgaacacggccgcgcacgcggaagacgggctcacccccggtgaagtggaggtggtc
ccggatcgggtccaggtactgacggtgcattcggccaaggggctggaatggcgcatcgtc
gcgattccgcatctggtcaaggaggtcttccccgggcggcggcgttcgtcatcgtggctg
cggacgtcgacctcgctgcccgccgcgctgcgcggggactcggaggatctgccggagctg
cggatccccgaaggcgcggaccgcaaggaagtccaggaagcgctggaactgcacgaagaa
ggcttcgtcgcgcgggaagcggatgaagagcggcggctctgctacgtcgcgctgacccgc
tccgagcacaccatgctgatctccggccattggtggaacgagagcagcgcgcggccgaag
gggccgtcggagttcttgctggaaatcggcgaggtgatgcggggcaactcggtcggccgc
atcgagccctgggccgacgagcccgagaccgacggcgagaacccgctggtcgccgacgcc
cgccggtcgcggtggccggtcgatccgctgtggccgcggcgcgagggcgtcacgaacggc
gtcgacatggtgctcggggcgatggaggacgccgagcatgcggaagaggaggaagaggac
gatccggacggctggatctccgacaccaaggtgctgctggaggagcgggcgcgggcgcgg
gaccgggtgcagcaggtcgtcctgccgccgcatctctcggtgagccagctggtcgagctg
tcggccgatcccgcggcgctggccaaacggctgcggcggccgcttcccgtacgccccaac
acgtacgcgcggcgagggacggcgttccacggctggctggagcagcggttcggcggcgag
cagttgctggagatccacgacctgccgggggcggcggacgtcgacgaggcgcccgacacc
gaactggaagcgctgcagaccgcgttcgagaagagcgagtgggcgcaccgggtgccgcac
gcggtcgaggtgccgttctcggcggacgtcgtgggcgtgacggtgcgcgggcggatggac
gcggtgttcgccgacgcggacggcggctggaccgtcgtcgactggaagaccggtgccgtt
ccggaagccgaccgggtcgagtcgctggccgtgcagctggcggcgtaccggctggcctgg
gcggcgttgaagaacatccccgtggagaaggtacgggcggcgttccactacgtgaaacac
gacaagaccgtccgcccggcggatctgctggacgccgaaggactacgccggctcctgcga
agcgtcccgacgatctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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