KEGG   Alteromonas mediterranea DE1: amad1_17885
Entry
amad1_17885       CDS       T02340                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
amaa  Alteromonas mediterranea DE1
Pathway
amaa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    amad1_17885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amaa03021]
    amad1_17885
   03400 DNA repair and recombination proteins [BR:amaa03400]
    amad1_17885
Enzymes [BR:amaa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     amad1_17885
Transcription machinery [BR:amaa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     amad1_17885
DNA repair and recombination proteins [BR:amaa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      amad1_17885
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AFV87056
Position
complement(4062188..4063174)
AA seq 328 aa
MGSVTEFLKPRLVEIENVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI
DGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVVAGDIQHDGDV
EIANPEHVICTLTGEAEISMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASYSPVER
IAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPEA
KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLTE
IKDVLASRGLSLGMRLENWPPESIAEKD
NT seq 987 nt   +upstreamnt  +downstreamnt
gtgggttctgtgactgaattcctaaaaccgagattagttgagatcgaaaacgtttctcct
actcgtgccaaagtaactttggaaccactagagcgcggctttggccatactctaggtaac
gccctacgtcgtattttactgtcatctatgccaggatgtgcagttaccgaggtagaaatt
gatggcgttcttcacgagtacagcaccaaagaaggtgtacaagaagacgttatcgaaatc
ttgctaaatcttaaaggtttagcggttcgccttgaaggtaaaactgaggcaaccctaact
ctagtgaaatctggcgctggccctgttgttgctggtgatattcagcatgatggcgacgta
gaaattgcaaaccctgagcatgttatttgtactttgactggcgaagctgaaatcagcatg
cgcatcaaagtagaaatgggccgtggttatgtaccagcttctacccgtcgctcctctgaa
gaagatgatcgtccaattggtcgtttgttagtagacgcttcatacagcccagttgaacgt
attgcttacagtgtagagtctgcacgtgttgaacaacgcacagacctagacaaactaatc
atcgacatggagacgaacggtactttggatcctgaagaagcgatccgccgttctgctact
atcctagctgaacagctagatgcattcgtagacctacgtgatgtatctgagccagaagcg
aaagaagagaagccagaattcgatccgattctgcttcgcccagtagatgacctagagcta
acagtacgttctgcaaactgtttgaaagcagaagctatccagtacattggtgacctggta
cagcgcactgaggttgagctacttaaaacgccaaaccttggtaagaaatcgctaactgaa
atcaaagatgttctagcatctcgtggtctttctctaggtatgcgcctagaaaactggccg
ccagagagcatcgctgaaaaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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