KEGG T02723: I636

Alteromonas mediterranea UM4b: I636_17475

Entry

I636_17475        CDS       T02723

Name

(GenBank) primosome assembly protein PriA

K04066

primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]

Organism

amad Alteromonas mediterranea UM4b

Pathway

amad03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:amad00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    I636_17475
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amad03400]
    I636_17475
Enzymes [BR:amad01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     I636_17475
DNA repair and recombination proteins [BR:amad03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     I636_17475

SSDB

Motif

Pfam:

PriA_3primeBD DEAD PriA_C Helicase_C ResIII PriA_CRR AAA_30 PriA-like_WH AAA_19 ABATE

Other DBs

NCBI-ProteinID:

AGQ03321

Position

complement(3958510..3960699)

AA seq 729 aa
MAFIQVAVPVPLRQLFTYTHDSALEAGVRVMVPFGPRKLVGVVVETLRKSESEIDNSNKL
KAIEMVLDHQPIVDGVLLKMAQWLWQYYHHAPGEVLHAMLPVLLRKGESAGPTPQDILML
TDEGKKTLSASLSRAPKQKACFTALTKRAMLAIEARKQFGAPAVKALVEKSLAVIKEVTP
EFKPGAWLSTLTMEDKPVPDTEQSVAIAALNRQHGNFAVSLLEGVTGSGKTEVYLQAIEP
LLREGKQVLILVPEIGLTPQTVSRFEKRFGIAVGVLHSQLSDKDRLQVWQRAKAGELGIV
IGTRSAIFTPLNNPGMLIVDEEHDESFKQQDGLRYHARDLAAMRAKQHNIPLLLGSATPA
LETLNNALSGRYAHLQLTKRAGGARSTHQHVLDARDQPIHYGISQGLLTIMRQHISAGNQ
VLVFVNRRGYAPALLCHHCGETVTCKRCERPYTVHKAQNRLQCHHCGGMRAMPTNCEACH
HNELVTAGTGTEQVEQGLASLFPGVTQVRIDSDTVRGKDKLHQTLDAINRQEYQLLVGTQ
ILSKGHHFPHVTLVAVLDCDGALFSADFRAPEKLAQLVTQLAGRAGRASKPGEMWLQTHN
PHHPLLQDLVHNGYGHFARHALMERKAASLPPFISQFVIRAEATDSSLAYRFLQDCKQVF
TQAHAIEISGPFPCLIEKRQGRFRFMLVCSHQKRAPLHNALRLALPFLQALPQATKVRWS
IDIDPTDFS

NT seq 2190 nt +upstreamnt +downstreamnt
atggccttcattcaagttgctgtaccagtgccgctgcgccaacttttcacatatacccac
gatagcgcactagaagcaggcgtacgggtaatggtgcctttcggtccgcgcaaacttgtg
ggcgtagttgttgaaacactacgaaaatcagagagcgaaattgacaatagcaacaagcta
aaagccattgaaatggtgctagatcatcaacctattgttgatggggtgctgctaaaaatg
gcgcaatggctgtggcagtactaccaccatgctccgggtgaagtgttacacgccatgctg
cctgtattattgcgaaaaggcgagtcggcaggccctactccacaagatatactcatgctt
accgatgagggtaaaaaaacgctgtcagcgtcgctatctcgcgccccaaagcaaaaagcg
tgttttaccgccttgaccaaacgggcgatgctcgcgatagaggcgcgtaagcagtttggt
gcgccagcggtaaaagccttggtagaaaagtcgcttgccgttatcaaagaggttactcct
gaatttaagccgggcgcttggctatctacgttaacaatggaagataagcctgttcccgat
actgagcagtcagttgccatcgccgcccttaaccgtcaacacggcaactttgcggttagc
ttacttgaaggggtgaccggtagcggcaaaacagaagtataccttcaagcgatagagcct
ttactgcgcgaaggaaagcaggtgcttatccttgtgcctgaaattgggcttaccccgcaa
acggtatcccgcttcgaaaagcgctttggcattgccgtgggcgtattgcattcgcaactt
tcagacaaagaccgtctgcaagtatggcagcgagcaaaagcgggcgagctcggtattgtt
ataggtacccgctctgctattttcaccccgcttaataacccgggtatgcttattgttgat
gaagagcacgacgagtcgtttaagcagcaggatgggcttcgctatcatgctcgcgatttg
gcggccatgcgtgcgaaacagcataatattcctttactgcttggcagtgccacccctgct
cttgaaacccttaataatgcgctaagcggccgctatgcgcatttacagctcaccaagcga
gccgggggcgcgcgaagtacccatcagcacgtattagatgcgcgcgaccagccaattcac
tacggtatttcacaaggcctgttaaccataatgcgccagcatattagcgcagggaatcag
gtgttggtgtttgtaaatcgccgaggctatgcgccagcgttactttgtcatcattgcggc
gagacagtaacgtgtaagcgttgcgagcgaccttacaccgtacacaaagcgcaaaaccga
ttgcagtgtcaccattgcggcggcatgcgtgctatgccaacaaactgtgaagcttgccat
cacaacgagctagttactgcgggtaccggaacagagcaagtagagcaggggcttgctagc
ttgtttcccggggtaacgcaggtgcgaatagacagcgacacggtgcgcggtaaagataag
ttacatcaaacgctcgatgcaattaaccgccaggaatatcagctgctggtgggcactcag
attttgtctaaaggccaccactttcctcacgtcacattagtggctgttctcgattgcgat
ggcgcactgtttagcgcagacttcagagcccctgaaaagcttgctcaactggtaactcaa
cttgctggaagagcggggcgtgcaagtaaacccggtgaaatgtggctgcaaacccataat
cctcatcacccgctgctacaagatttggtgcataatggttacgggcactttgccaggcat
gcgttaatggagcgaaaagcggcaagcttgcccccgtttattagtcagttcgtaatacgc
gccgaagctaccgatagcagtttggcctatcgatttttacaagactgtaagcaggtattt
acgcaagcgcacgccattgagataagcggcccgttcccatgcctaattgaaaagcgacaa
ggccgatttcgattcatgctggtgtgtagtcatcaaaaacgcgccccgcttcataatgcg
ctgcgtttggcgcttccgtttttacaggctttaccgcaggccactaaggtaaggtggtca
atcgatattgatcctaccgatttcagttag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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