KEGG T02721: I876

Alteromonas mediterranea U7: I876_03250

Entry

I876_03250        CDS       T02721

Name

(GenBank) ATP-dependent RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

amae Alteromonas mediterranea U7

Pathway

amae03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:amae00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I876_03250
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amae03019]
    I876_03250
   03009 Ribosome biogenesis [BR:amae03009]
    I876_03250
Enzymes [BR:amae01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     I876_03250
Messenger RNA biogenesis [BR:amae03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     I876_03250
Ribosome biogenesis [BR:amae03009]
Prokaryotic type
  rRNA helicases
   I876_03250

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII CMS1 HEM4 AAA_30

Other DBs

NCBI-ProteinID:

AGP88535

Position

complement(761084..762853)

AA seq 589 aa
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
TIMAALLKIAQGDEPLILKESDRPDINSKPPRDNRDRNSRDGRDGRERKPRVPRGNRKPE
EGMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRD
TLSGTRVAGQRLNIREWSDTPPKRDGRGSRGDKGDRAPRGNRENRKRKN

NT seq 1770 nt +upstreamnt +downstreamnt
atgacaacaactgtcgacatgacatttaaagacctcaatttaccagaaccaatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ttacttgaaggacacgacttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaattagcaattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttccagtatacggcggtcagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgttcaggtggttgttggtacaccaggccgtatcatcgaccac
attaagcgcaaaacactagacttaagcgaacttaagttcttagtgctagacgaagctgac
gaaatgcttcgtatgggctttatcgatgacgttgaacttattcttagccacgcaccagaa
gagcgccaaaccgcactgttctcggcaactatgcctggcccaattaagaagattactcag
cgatacttgaaagaccctaagcacgttaaaattgcgtctaaggtaagtacagctagcacc
attcgccagcgttattgccaaattgcaccacaccacaagcttgaagcgctaacgcgtatc
atggaagtggaagtattcgacggaatgatcatattcgtacgtacgaaaaccgctacggtt
gaactagcagataaactctctgctcgtggttacgacgtagaaccactaaacggtgatatt
cctcaggcagctcgtgagcgcactgttgaaaaacttaaacagggtaaaattgatatcctt
gtcgctaccgacgttgtagcccgtggtcttgacgttgagcgtgtaagccacgttatcaac
tacgatatcccgtacgacagcgaatcttacgtacaccgtatcggccgtactggtcgtgct
ggtcgtcaaggtgatgcgatcctatttatctctcaccgtgaaaagcgcttgttattctct
atcgagaaaaccactaaacagcctattgaagcaatgccaattccttcaattagcgaaatt
aacgaaacccgtttaagccgcttcaaacaatcggttgccgaagcaacccaagacgatagc
attgaatcattaatgcctattgttgagatgattaaagaagaaaacgaagcgtctcctgaa
accatcatggctgcgctacttaaaattgcgcaaggcgacgagccgttaattcttaaagaa
tcagatcgaccagacatcaacagcaagcctccacgcgataatcgtgatagaaactctcgc
gatggtcgtgatggccgcgaaagaaagccaagagtaccacgtggtaaccgcaagccagaa
gaaggcatgcagcgcttccgtattgaagtaggtcatgttcacggcgctaagcctggcaac
atcgttggcgctattgcgaacgaagcaaacataaactcgaagcacattggcgctatcgag
atttatgataacttcagtactgttgatttacctgacggtatgccaaaagaaacccgtgac
accctttcgggcacacgcgtagcaggtcagcgattgaacattcgtgaatggtcagacacg
ccacctaagcgcgacggtcgtggaagccgcggtgacaaaggtgatcgtgcacctagaggc
aaccgtgaaaaccgtaaacgtaagaactaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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