KEGG   Alteromonas mediterranea DE: MADE_1020510
Entry
MADE_1020510      CDS       T00747                                 
Symbol
gidA
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification protein
  KO
K03495  tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
amc  Alteromonas mediterranea DE
Brite
KEGG Orthology (KO) [BR:amc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:amc03016]
    MADE_1020510 (gidA)
   03036 Chromosome and associated proteins [BR:amc03036]
    MADE_1020510 (gidA)
Transfer RNA biogenesis [BR:amc03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    MADE_1020510 (gidA)
 Prokaryotic type
    MADE_1020510 (gidA)
Chromosome and associated proteins [BR:amc03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    MADE_1020510 (gidA)
SSDB
Motif
Pfam: GIDA GIDA_C_1st GIDA_C FAD_oxidored FAD_binding_2 Pyr_redox_2 AlaDh_PNT_C HI0933_like DAO Pyr_redox_3 Pyr_redox Thi4 DUF3670 DUF3947 NAD_binding_9
Other DBs
NCBI-ProteinID: AEB00225
UniProt: B4RS92
Position
complement(4471297..4473198)
AA seq 633 aa
MFYTEAFDVIVVGGGHAGTEAALAAARMGANTLLLTHNIETIGQMSCNPAIGGIGKGHLV
KEIDALGGAMALAIDKGGIQFRTLNSSKGPAVRATRAQADRTLYKNAIRDIVENQENLTL
FQQSVDDLIVENDRVCGVVTQMGLKFKAKSVVLTVGTFLGGTIHIGLENYRGGRAGDPPS
IALADRLRALPFRVDRLKTGTPARLDARSLDFSVMQPQPGDSPTPVFSFMGDRAMHPTQI
PCYITHTNEKTHDIIRGGLDRSPMFTGVIEGIGPRYCPSIEDKITRFADKTSHQIFVEPE
GLNSIEVYPNGISTSLPFDVQMNLVRSIKGFENAHIVRPGYAIEYDFFDPRDLKQTLETK
FIQGLFFAGQINGTTGYEEAGAQGLVAGANAALQVQQKDPFILRRDQAYMGVLIDDLATM
GTKEPYRMFTSRAEYRLLLREDNADSRLTAMGREIGLVDDARWAKYNDKMEAVETELQRL
RGQWIHPDHAATPQLNTMLKNPVSREHSLEELIRRPEMTYSQLMKIESVGPGIDDPIAAE
QVEIQIKYAGYIARQMDEIAKTQRHENTLLPIDMDFSKISGLSNEVVAKLTEARPETIGK
ASRISGITPAAISLLLVYLKKHGMLRKQDKISA
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgttttatactgaagcatttgatgtcatcgttgtaggtggtggacatgcgggtacagag
gcagcgcttgcggctgcacgcatgggtgcaaatacacttttgctaactcacaatattgaa
acgattggccaaatgtcatgtaacccagctatcggtgggatcggcaaaggtcatttggtt
aaagagatcgatgcattaggtggcgcaatggcgctagctatcgataaaggcggtattcag
tttagaacactaaactcttcaaaaggacctgctgttcgcgctacacgtgcacaagcagat
aggactttgtacaaaaatgccattcgtgacattgtagaaaatcaagaaaacctaacgtta
tttcagcaaagtgtcgacgatctcattgtagaaaacgatcgcgtatgcggtgtggttacc
caaatgggcttgaagtttaaagccaagtctgtggtattaaccgtgggtacgttccttggc
gggaccatacacatcggccttgaaaattatcgcggtggtcgtgcgggcgatccaccgtct
attgcgcttgctgatagactacgtgcccttccgtttcgtgttgaccgattaaaaaccggg
acaccagcaagactggatgcacgctctttagatttttctgtaatgcagcctcagcctggt
gacagtccaacaccggtattctcgtttatgggtgatagagccatgcaccctacacagatc
ccgtgttacattacccacactaacgaaaagacccacgatattattcgcggcggcctagat
cgctctccaatgtttaccggcgtgatcgaggggattggcccgcgctattgcccgagtatc
gaagataagatcacccgttttgcagacaagacatcgcatcaaatttttgttgagccagaa
ggcttaaacagcattgaagtttatccgaacggaatttcaaccagtctaccatttgacgta
cagatgaaccttgtccgctcgatcaaagggtttgaaaacgcacatatcgttcgtccgggt
tatgccattgaatatgatttctttgatccgcgtgatttgaaacagaccctggaaaccaaa
tttattcaaggtctcttctttgctgggcaaattaacggtaccactggctatgaagaagcc
ggtgcacaaggactagtggctggcgcgaacgctgcacttcaagtgcaacaaaaagacccg
tttatcttacgtcgcgatcaggcttatatgggcgtactgattgacgacttagcgacaatg
ggaaccaaagaaccctatcgtatgtttacgagccgcgcagaataccgactgctacttcgc
gaagataacgccgacagccgtttaactgcgatgggtcgagaaatcggtcttgttgatgat
gcgcgttgggcgaagtacaacgataaaatggaagcggtagaaacagagcttcagcgttta
cgtggtcagtggatccatcctgatcacgcagcaacgcctcaactcaataccatgctgaaa
aatccggtaagccgtgaacattcgctggaagaattgattcgacgccctgaaatgacctat
agccaattaatgaaaattgaaagcgtgggtccgggcattgacgatcccattgccgccgag
caggtagaaattcaaattaagtacgccggttatattgcccgccaaatggacgaaatcgcg
aaaacccaacggcatgagaatacgttgctaccgattgatatggactttagcaaaatttct
ggcttgtcaaatgaggtggtagctaaacttacggaagcgcgtccagaaactatcggcaaa
gcatctcgtatttctggcattacgcctgcggccatctcgttattgctggtttaccttaaa
aagcacggcatgttgcgtaaacaagacaaaattagcgcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (76)   
   KEGG ORTHOLOGY (1)   
   RefGene (73)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (15)   
   Pfam (15)   
All databases (106)   

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