KEGG   Amycolatopsis mediterranei U32: AMED_5916
Entry
AMED_5916         CDS       T01269                                 
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP+)
  KO
K00135  succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
Organism
amd  Amycolatopsis mediterranei U32
Pathway
amd00250  Alanine, aspartate and glutamate metabolism
amd00310  Lysine degradation
amd00350  Tyrosine metabolism
amd00650  Butanoate metabolism
amd00760  Nicotinate and nicotinamide metabolism
amd01100  Metabolic pathways
amd01120  Microbial metabolism in diverse environments
Module
amd_M00027  GABA (gamma-Aminobutyrate) shunt
amd_M00957  Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:amd00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00650 Butanoate metabolism
    AMED_5916 (gabD)
  09105 Amino acid metabolism
   00250 Alanine, aspartate and glutamate metabolism
    AMED_5916 (gabD)
   00310 Lysine degradation
    AMED_5916 (gabD)
   00350 Tyrosine metabolism
    AMED_5916 (gabD)
  09108 Metabolism of cofactors and vitamins
   00760 Nicotinate and nicotinamide metabolism
    AMED_5916 (gabD)
Enzymes [BR:amd01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.1  With NAD+ or NADP+ as acceptor
    1.2.1.16  succinate-semialdehyde dehydrogenase [NAD(P)+]
     AMED_5916 (gabD)
    1.2.1.20  glutarate-semialdehyde dehydrogenase
     AMED_5916 (gabD)
    1.2.1.79  succinate-semialdehyde dehydrogenase (NADP+)
     AMED_5916 (gabD)
SSDB
Motif
Pfam: Aldedh
Other DBs
NCBI-ProteinID: ADJ47659
UniProt: A0A0H3DDE5
Position
complement(6559807..6561168)
AA seq 453 aa
MYTVINPATGELVDEIPNAADEEVRDAIDRVHRGYAAWRARPVAERAAIVRRAGELFAER
ADELAAIMTLEMGKRINEGRGELGVVADIFRYYGERGPDLLADEPLAIRGGEAVLTKEPI
GALLGVMPWNFPCYQVARFVAPNLVLGNTILLKHASICPRSAVAIEAVLRDAGVPADAYV
NVFASSRQVPWMLADPRLAGVSLTGSEQAGISVAAEAGRNLKKCVLELGGSDPLIVLDTD
DLDETVKITATARMRNCGQSCNAPKRIIVLGGWYEEFTDRFAKRVTEYYVPGDPADPSTT
LPPLASSAAADEVSAQIETAIREGATLRAGGHRIPGPGAYVEATVLTEVTPEMAAYHEEI
FGPVALLFRAETEEEAVALANDTPFGLGASVFAADRTRAARVARRIEAGMVYVNKSGGSE
ADLPFGGIKRSGMGRELGPLGIEEFMNKKPIRL
NT seq 1362 nt   +upstreamnt  +downstreamnt
gtgtacacagtcatcaacccggcgacgggtgagctggtcgacgaaatcccgaacgcggcc
gacgaggaggtccgcgacgcgatcgaccgggtgcaccgcgggtacgcggcttggcgggcc
cggccggtcgccgaacgcgccgcgatcgtgcggcgcgcgggggagctgttcgccgagcgc
gcggacgagctcgccgcgatcatgacgctggagatgggcaagcggatcaacgaaggccgc
ggcgaattgggcgtcgtcgccgacatcttccggtactacggcgagcgcggcccggacctg
ctggcggacgagcccctggccatccgcggcggcgaggcggtgctgacgaaggagccgatc
ggggcactgctgggcgtgatgccgtggaacttcccgtgttaccaggtcgcccggttcgtg
gcgccgaacctggtgctgggcaacacgatcctgctcaagcacgcgtcgatctgcccgcgt
tcggcggtcgcgatcgaggcggtgctgcgggacgccggcgtgccggcggacgcgtacgtg
aacgtgttcgcgtcgagccgccaagttccgtggatgctcgcggacccgcgcctcgccggg
gtgtcgctgaccggcagtgagcaggcgggcatctcggtggcggccgaagccgggcgcaac
ctcaagaagtgcgtcctggaactgggtggctcggacccgctgatcgtgctggacaccgac
gacctcgacgagacggtcaagatcacggcgacggcccggatgcgcaactgcggccagtcg
tgcaacgcgccgaagcgcatcatcgtgctgggcgggtggtacgaagagttcaccgaccgg
ttcgccaagcgcgtgacggagtactacgtcccgggcgacccggccgacccgtcgacaacc
ctgcccccgctggcctcgagcgcggcggcggacgaggtgtcggcccagatagagacggcg
atccgcgaaggagcaacgctgcgcgcgggcggccaccgcatcccgggcccgggcgcgtac
gtggaggcaacggtcctgacggaggtgacgcccgagatggcggcgtaccacgaggagatc
ttcggcccggtggcgctgctgttccgggcggagacggaggaagaggcggtcgccctggcc
aacgacacaccattcgggctgggggcaagcgtgttcgcagccgaccgaacccgggcggct
cgcgtggcgcggaggatcgaggcgggaatggtgtacgtgaacaagtcgggcgggtcggag
gcggacctgccgttcggcgggatcaagcggtcgggcatgggacgcgagctggggccgttg
gggatcgaggagttcatgaacaagaagcccatccgcctctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (10)   
   KEGG PATHWAY (7)   
   KEGG MODULE (3)   
Chemical substance (10)   
   KEGG COMPOUND (10)   
Chemical reaction (6)   
   KEGG ENZYME (3)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (40)   

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