KEGG   Ailuropoda melanoleuca (giant panda): 100465799
Entry
100465799         CDS       T01329                                 
Symbol
PABPC4
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4
  KO
K13126  polyadenylate-binding protein
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03015  mRNA surveillance pathway
aml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100465799 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100465799 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aml03019]
    100465799 (PABPC4)
   03041 Spliceosome [BR:aml03041]
    100465799 (PABPC4)
Messenger RNA biogenesis [BR:aml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100465799 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     100465799 (PABPC4)
Spliceosome [BR:aml03041]
 Complex C
  Other components
   Complex C specific factors
    100465799 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_7 RRM_3
Other DBs
NCBI-GeneID: 100465799
NCBI-ProteinID: XP_034505741
Ensembl: ENSAMEG00000011535
Position
2:complement(16664537..16679599)
AA seq 656 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGXIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
KLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKDSKAK
NT seq 1971 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctctacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagcccgctgacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcttgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacgcaagaggctgctgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagagggaa
gctgagctgggagccaaagccaaggagttcaccaatgtttacatcaaaaacttcggggaa
gaggtggatgacgagagtctgaaagagctgtttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgagaaa
cacgaggatgccaataaggccgtggaagagatgaatggaaaagaaatcagtgggaaagtg
atttttgtaggccgtgcacagaagaaagtggaacggcaggctgagttaaagcggaaattt
gaacagctgaaacaagagagaattagtcggtatcagggggtgaatctctacattaagaac
ttggatgacaccattgatgatgagaagttaaggaaagagttttctccttttggctcaatc
accagtgctaaggtaatgttggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatctcctgaagaggcgaccaaagcagtcactgagatgaatgggnncatcgtgggctcc
aaaccactctatgttgccctggcccagaggaaggaggagagaaaggctcacctgaccaac
cagtatatgcagcgggtggccggaatgcgagcgctccctgccaacgccatcttaaatcag
ttccagcctgcagctggggggtactttgtgcccgcggttccgcaggctcagggaagacct
ccatattacacacccaaccagctagcacagatgaggcctaacccccgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccgagtgctatacgccagtctgggcctcgtccc
gctcttcgccatctggctccaactggtaatgctccggcctctcgcggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggc
gccgcccagcaagggctgactgacggctgccagtctggaggtgttcccacagctgtgcag
accttagctcctcgtgccgctgtcgctgccgccgcccctcgggctgtcgcaccttacaaa
tacgcctccagtgtccgcagccctcaccctgccatccagcctctgcaggcaccgcagcct
gcggtccacgtgcaggggcaggagcccctgaccgcctccatgctggctgcagcgcccccc
caggagcagaagcagatgctgggagaacgtttgttcccactcatccaaaccatgcattcc
aaactggcggggaagatcacgggcatgctgctggagatcgacaactctgagctgctgcac
atgctggagtcccccgagtctctccgctccaaggtggacgaagctgtggccgttctgcag
gctcatcacgccaagaaagaggctgcccagaaggattcaaaagccaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (51)   

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