KEGG   Alkaliphilus metalliredigens: Amet_0722
Entry
Amet_0722         CDS       T00551                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
amt  Alkaliphilus metalliredigens
Pathway
amt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:amt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Amet_0722
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amt03400]
    Amet_0722
Enzymes [BR:amt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Amet_0722
DNA repair and recombination proteins [BR:amt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Amet_0722
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 AAA_11 Viral_helicase1 HHH_5 PIF1 AAA_22 HHH_2 T2SSE HHH RsgA_GTPase nSTAND3 PhoH AAA AAA_28 Helicase_RecD DEAD UvrD-helicase AAA_24 ATPase_2 SLFN-g3_helicase SRP54 HerA_C TrwB_AAD_bind Rad17 AAA_7 AAA_16 NTPase_1 ResIII
Other DBs
NCBI-ProteinID: ABR46947
UniProt: A6TL79
Position
769231..771495
AA seq 754 aa
MRVTGGSAVVELEGQLVEIIFQNESNGYMVGILEAKEEIATIVGCLPAIKEGEQLAVKGK
WAVHPVYGRQLEVGEYRPIQPSTKEGILNYLSSGVIKGVGKKMAERIVDLFGMDSLEVIQ
YAPERLREVEGIGRAKAETITETFRDQKELREIILFLSEYHITPNYAVKIHKKYGDKTIA
TIQENPYRLADEIVGIGFKRADAIARNMGVHPHSKYRIHSGIKYMLNTFQGEGHTYAPGV
KLIQRAEELLRVEEGQVEGAIQELALNQEIQLERIDDEIIVYSMPYYYAESNVCKKLISL
AQVELDPIEMDIDEELQKIEQAEEMTLAKQQKEAIKEAIENGISVITGGPGTGKTTTINS
LIKVFEKLELKMLLAAPTGRASKRMTEATGKESKTIHRLLELGFGDDREGMLFQRNEDNP
LDCHVIIIDEVSMVDIILMNSLMKSIARGTRVVLVGDVDQLPSVGAGNVLRDIIDSKVVK
TIRLTEIFRQAQESMIVVNAHRINQGLYPQLNEKQKDFYFMKRNAKEDVLATVVELVRDR
LPKHYQFDALRDIQVLTPMKKGETGTLNLNKELQAALNPPNVSKAEKDLKEKIFREGDKV
MQIKNNYTLKWRCLDPMAEEQKGEGVFNGDIGYVQSIDTEAEELVILFDDQKQVNYSFTQ
LDELELAYSVTIHKSQGSEFPVVVIPITWGPPMLLTRNLLYTAVTRARSLVVLVGVESYL
KKMVDNNKIIERYSGLGRRLGKYFEMQIKDETKI
NT seq 2265 nt   +upstreamnt  +downstreamnt
atgcgtgtaacaggaggaagtgctgtggttgagctagaaggacagttagtggaaatcatt
tttcaaaatgaatccaatggatatatggtagggattttagaggcaaaagaagagatcgcc
acaattgtaggctgtttgcctgccattaaagaaggagaacaattggctgtaaaggggaaa
tgggcggtgcatcctgtctacggcagacagctagaggtaggggaataccgtcccattcaa
ccctccacaaaggaagggatcttaaattacttatcctcaggagtcatcaaaggcgtggga
aaaaagatggcggagcgaattgtggatctatttggaatggattctttggaggtgattcaa
tatgccccagaacgattgagggaggtagagggtattgggcgagctaaggcggagaccatc
accgagacctttagggatcaaaaggagctcagggaaatcattctctttctttcggagtat
catatcacccctaattatgcagtaaagatacataaaaagtatggagataaaaccatcgcc
actattcaagaaaatccctatcggttggcggatgaaattgttgggattggttttaaaaga
gccgatgccatagctcgaaatatgggggttcatccccattcaaaataccgaattcattca
ggaattaaatatatgttaaacacattccaaggggaaggtcatacctatgcaccgggtgtt
aagctaatccaacgggcagaggagctactcagggtagaagaaggtcaggtagaaggcgcc
atccaagagcttgccctgaatcaggaaatacaattagaacgaattgatgatgagattatc
gtttattctatgccctattattatgcagagtctaatgtatgtaaaaagctcatcagttta
gctcaagtagagttagaccccatcgaaatggatattgacgaagaactacagaagattgaa
caagcagaagagatgacactggcaaagcaacaaaaagaagccatcaaagaagcaatcgag
aatggaatttcagtcattactggaggtccgggaacaggaaagacaacaaccatcaatagt
ctgattaaggttttcgaaaagttagagttaaagatgctattggcagcccccacaggcaga
gcctctaaaagaatgacagaggccactggaaaagaatcaaaaaccattcaccggttattg
gaattgggatttggagatgaccgtgaaggcatgctttttcaacgaaatgaagataatccc
ctagattgtcatgtcatcatcattgatgaagtgtccatggtggatattatattaatgaat
agcctaatgaagtccattgctagggggactcgggttgtattagtaggagatgtagatcag
cttccctctgtgggtgctggaaatgtacttcgagacattattgacagcaaggttgtgaag
accattcgactaacggaaattttccgtcaagcccaggagagcatgattgtcgtcaatgcc
catcgaatcaaccaggggctctatccacaattaaatgaaaagcaaaaggatttttatttt
atgaaacgaaatgccaaggaggatgttttagccaccgtagtggaattggtgagagaccga
cttcctaagcactatcagtttgacgccctacgtgatattcaagtgctgacacccatgaaa
aagggggagactggaacactaaatctgaacaaagagcttcaggcagctttgaatcctcca
aatgtatccaaggcagagaaggatctcaaggaaaagatcttccgagagggagacaaggta
atgcaaattaaaaataactatacattaaagtggcgctgtctagatcccatggctgaagaa
caaaagggggagggtgtcttcaatggagatattggatatgtccaaagcatcgatacagag
gcggaagagttggtcatactatttgatgaccaaaaacaagtcaactacagctttacccag
ctagatgaattggaactggcctactccgtcaccatccacaaaagtcaaggaagtgagttt
cccgttgtagtcattcccattacatggggaccccctatgttattaactcgaaatctactc
tacaccgcagtaacccgagccagatccctggtggtattggtcggggtggaaagctattta
aaaaaaatggtggacaacaataaaattattgagcggtactctggactagggagacgtttg
gggaaatactttgaaatgcagattaaggatgaaactaaaatttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (32)   
   Pfam (32)   
All databases (57)   

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