KEGG   Pelagerythrobacter marensis: AM2010_1405
Entry
AM2010_1405       CDS       T03951                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
amx  Pelagerythrobacter marensis
Pathway
amx03030  DNA replication
amx03410  Base excision repair
amx03420  Nucleotide excision repair
amx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AM2010_1405
   03410 Base excision repair
    AM2010_1405
   03420 Nucleotide excision repair
    AM2010_1405
   03430 Mismatch repair
    AM2010_1405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amx03032]
    AM2010_1405
   03400 DNA repair and recombination proteins [BR:amx03400]
    AM2010_1405
Enzymes [BR:amx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AM2010_1405
DNA replication proteins [BR:amx03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AM2010_1405
DNA repair and recombination proteins [BR:amx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AM2010_1405
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AM2010_1405
   MMR (mismatch excision repair)
    DNA ligase
     AM2010_1405
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AM2010_1405
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT
Other DBs
NCBI-ProteinID: AKM07477
UniProt: A0A0G3X8F1
Position
complement(1465657..1467825)
AA seq 722 aa
MTVDVPSEAEAANELMRLAKQIARHDRLYHAEDAPEITDQEYDALVRRNAELEAQFPHLV
RPDSPSRAVGHAVAASPLSKVTHEVRMMSLDNAFADEEVADFVARVRRFLALEESAPVAF
TAEDKIDGLSCSLRYENGVLVRAATRGDGQVGEDVTANVAHIPDIPAELTGDVPEVFEVR
GEVYMEREAFVALNARLMEEARSAAEAKGEAFDPAKVRQFANPRNAAAGSLRQKDASVTA
SRPLRFWAHGWGAASAVPGDTQFAVMQRIGEWGLPISPDLVRCETLEAMLSHYRAIGERR
GALGYEIDGVVYKVDRLDWQERLGFVAKAPRWAMAHKFPAEQAETTLEAIDIQVGRTGKL
TPVGRLAPVLVGGVTVTNVTLHNRDEIARLGVRPGDRVKVQRAGDVIPQVVENLTCDEER
EPYRFPDQCPECGSEAVAEEGEVDVRCTGGLVCPAQRTERLKHFVSRGALDIEGLGEKTI
DQFFALGWLESPADIFRLKDRRDAILALDGWKDKSVENLLASIEAKRRPDAARLLFGLGI
RHVGVVTARDLMKGLGEIARLPGKAADIQAYREQNPRGEGESDGKFNARMVDAIKDILEV
RADGIGTAVGFALADFFHEKHNRAVFDDLLRELDPPRYEVETKESSVSGKTVVFTGKLET
MSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAAELGIEVIDEAQWAQIVAE
AG
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgaccgttgacgtcccctccgaagccgaagccgcgaacgagctgatgcggctggcgaag
cagatcgcgcggcacgaccggctctaccatgccgaggacgcgcccgagatcaccgatcag
gaatacgacgcgctcgtgcgccgcaatgcggagctggaggcgcagtttccccatctcgtc
cgccccgattcgccctcgcgcgcggtcggccacgcggttgcggcttcgcctctgtccaag
gtcacgcacgaggttcgcatgatgagcctcgacaatgccttcgccgacgaggaagtggcc
gatttcgtcgcccgcgtgcggcgtttcctggcactggaggaaagcgcgccggtcgccttc
actgccgaggacaagatcgacgggctatcgtgctcgctgcgttacgagaacggcgttctc
gtgcgcgcggcgacgcgcggcgacgggcaggtgggcgaggacgtgaccgccaatgtcgcg
catattcccgacatcccggccgagttgaccggcgacgtgcccgaggtgttcgaggtgcgc
ggcgaggtctacatggagcgcgaggccttcgtggcgctcaacgcccgcctgatggaggaa
gcgcgcagcgcggccgaggcaaagggcgaggctttcgatccggccaaagtgcgccagttc
gccaatccgcgcaatgccgcggccgggtcgctgcggcagaaggacgccagcgtcaccgcc
agccgcccgctgcggttctgggcccacggctggggcgcggccagcgcggtgccgggcgat
acgcagttcgccgtgatgcagcggatcggcgaatggggcctgccgatcagccccgacctc
gtccggtgcgagacgctggaggcgatgctgtcccattaccgcgcgatcggcgaaaggcgc
ggtgcgctcggctacgaaatcgatggcgtggtctacaaggtcgaccggctcgactggcag
gaacggctcggcttcgtcgccaaggcgccgcgctgggcgatggcgcacaagttccccgcc
gaacaggccgaaacgacgctggaagcgatcgacatccaggtcggccgcaccggcaagctg
acgccggtgggccggctcgcccccgtcctggtcggcggcgtgacggtgaccaatgtcacg
ctgcacaaccgcgacgaaatcgcccgcctcggcgtgcggcccggcgaccgggtcaaggtc
cagcgtgccggcgacgtgattccgcaagtggtcgaaaacctgacctgcgatgaagagcgc
gaaccctatcgcttccccgatcagtgccccgaatgcggcagcgaggccgtggcggaagag
ggggaagtcgatgtccgctgcaccggcggcctcgtctgcccggcgcagcggaccgagcgg
ctcaagcacttcgtcagccgcggcgcgctcgatatcgaggggctgggcgaaaagacgatc
gatcagttcttcgcgctcggctggctcgaaagcccggccgacatcttccgcctgaaggac
cggcgcgatgcgatcctggcgctggatgggtggaaggacaagtcggtcgagaacctgctg
gccagcatcgaggccaagcgtaggcccgacgcggcgcggctgctgttcggcctcggcatc
cggcatgtcggcgtggtcaccgcgcgcgacctgatgaaggggctgggcgagatcgcccgc
ctgcccggcaaggccgcggacatccaggcctaccgcgaacagaacccgcgcggggagggc
gaatccgacggcaagttcaacgcccgcatggtcgatgcgatcaaggacatcctcgaagtt
cgcgccgacgggattggcaccgcggtcggctttgcgctggcggatttcttccacgagaag
cacaatcgcgcggtgttcgacgatctgctgcgcgaactcgatccgccgcgttacgaggtg
gaaacgaaggaaagctccgtctcgggcaagacggtggtcttcaccggcaagctggagacc
atgagccgcgacgaggccaaggcccaggccgaacggctgggggccaaggccgccggctcg
gtcagcgcgaagaccgatctgctggtcgccggaccgggcgcgggcagcaagctgaagaag
gcggcggaactggggatcgaggtgatcgacgaggcccagtgggcgcagatcgtcgcggag
gcggggtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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