KEGG   Asparagus officinalis (garden asparagus): 109842946
Entry
109842946         CDS       T05243                                 
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof04120  Ubiquitin mediated proteolysis
aof04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109842946
   04120 Ubiquitin mediated proteolysis
    109842946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:aof04121]
    109842946
Enzymes [BR:aof01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109842946
Ubiquitin system [BR:aof04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109842946
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-C3HC4_3 FlxA zf-ANAPC11 MIX23 zf-HC5HC2H zf-RING_16 zf-RING_5 Nre_N zf-RING_11
Other DBs
NCBI-GeneID: 109842946
NCBI-ProteinID: XP_020267460
Position
5:11574405..11591165
AA seq 478 aa
MLRLQTYAGFSFLAVITVIYHAFNSRGQFYPAMVYLSTSKVCFVLLLNMVLVFMCILWQL
VKLLFLGTLREAEIERLNEQVWREIMEILFAITIFRQDFSVTTLGMITTLLMIKSLHWLA
QKRVDHIETAPSVSLLSHVRIASFLVFLLVVDCVLLHRPLKSFIQTKKASVALFFLFEYT
ILASTTMSTLLKYAFYVCDVIMEGQWEKKAVFTFYLELVRDLVNLSLYILFFLVIFAHYG
LPLHLIRELYETFRSFRIRIADYIRYRKVTSNVDERFPSATPEEINASDATCIICREEML
TAKKLHCGHLFHVHCLRSWLERQNICPTCRALVIPPENGSAASGQQARSTPASTSPQGSE
DVHLSPDQARLKAAALAASVYERSFVCSPPGTNIGSSGYSSVSYGNMPATPAPAIGNPDP
KISMLKAREAFIQTQIEILRSELQAVQKQKKDEDKASIGDADGAVSDIKGKAIVNASL
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgttgaggctgcaaacttatgctggatttagtttcttggcggtgattactgttatatat
catgcatttaacagcagaggacagttctatcctgccatggtttatttgtccacttcaaaa
gtctgttttgtgcttcttttgaacatggtcctcgtcttcatgtgcatactgtggcagcta
gttaagcttttgtttcttggtactcttagagaagcagaaatcgaaagattaaatgaacaa
gtatggagggagattatggaaattctttttgctattactatatttaggcaagatttctcc
gttactactcttgggatgattaccacacttttgatgattaaatccttgcattggctggcg
caaaagagggttgaccacattgagacggctccatcggtttctttactttcccatgtcagg
attgcttcctttttggtatttcttctcgttgtggattgtgttctattgcacaggcctctg
aagtcatttatacagacaaagaaggcatcagttgccctcttctttttatttgaatacacc
atattagcgtcaacaacgatgtcaacattattgaagtatgctttctacgtttgtgacgtg
atcatggaagggcagtgggagaagaaggctgtgtttacattttacttggaacttgtccgc
gaccttgttaacttgtcattgtatatccttttctttcttgtgatcttcgcgcactatggt
ttgccgctgcacttgatccgagaactctatgagacatttcgcagcttcagaatccgcatt
gcggattacattcgttaccggaaggttacatcaaatgtggatgagcggttcccgagtgca
acacctgaggagattaatgcaagtgatgcaacgtgcattatttgccgtgaagagatgtta
acagccaaaaagttgcattgtgggcacctttttcatgtgcattgtttgcgatcatggtta
gaacgacagaatatttgcccaacttgcagagctttagttattcctcctgaaaatggatca
gctgcatctggacaacaagccagatccacaccggcaagcacatctccgcaaggctcagaa
gatgttcacttaagcccagaccaggcgaggcttaaagctgctgcattggctgcttccgtt
tatgaaaggtcttttgtctgttctccgccaggcactaacattgggtcttctggatattcc
tcagtaagttatggaaatatgccagctactccagctcctgctataggcaatccagaccct
aaaatttccatgttgaaagcacgcgaggcttttatccagacccagattgagatcctgcga
agcgagttgcaagctgtgcagaaacaaaagaaagacgaggacaaggcaagcattggagat
gcagatggtgctgtctctgatatcaagggaaaagccattgtcaatgcttccttatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (45)   

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