KEGG   Bradyrhizobium oligotrophicum: S58_12320
Entry
S58_12320         CDS       T02484                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
aol  Bradyrhizobium oligotrophicum
Pathway
aol03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aol00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    S58_12320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aol03019]
    S58_12320
   03400 DNA repair and recombination proteins [BR:aol03400]
    S58_12320
Enzymes [BR:aol01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     S58_12320
Messenger RNA biogenesis [BR:aol03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     S58_12320
DNA repair and recombination proteins [BR:aol03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      S58_12320
SSDB
Motif
Pfam: RQC HRDC DEAD RecQ_Zn_bind Helicase_C Fic-like_C Hydant_A_N ResIII
Other DBs
NCBI-ProteinID: BAM87242
UniProt: M4Z383
Position
complement(1410842..1412719)
AA seq 625 aa
MPSTPNAPTDRADRALAVLHSVFGLPGFRGAQEKVVRHVAEGGNCLVLMPTGGGKSLCYQ
LPALLRRGCGIVVSPLIALMRDQVAGLLEAGVNAAVLNSTLSREEADEVERRLISGDLDL
LYVAPERLVTPRCLSLLERADIALFAIDEAHCVSQWGHDFRPEYIGLSVIAERFPDVPRI
ALTATADELTRKEIAERLSLTDAPQFVASFDRPNIRYEIVDKNNGPAQLKAFIKERHPGD
AGVVYCLSRAKVEDTAAALTEAGITAIPYHAGLDAGVRARNQDRFINEDGVVVVATVAFG
MGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSTAWMAYGLSDIVQQRRMIDESTG
AEAFKRVSIRKLDALVALAETAGCRRKLLLSYFGESPAGDNCGNCDNCVSPPKMRDGKVI
AQKLLSCAYRTGQRFGAMHLIDVLVGRATERVKQFGHDQLSVFGIGRELNEKQWRAALRQ
LVAMGHLAPDSEAYGALKFTETSRGVLKGETPVMLREETAHAARAIRSKSRRGELVPRPG
PADDATLLASLRAWRAEIARKRGVPAYVVLHDATIDGIAAARPTTSGQLRGIPGIGDKKL
EHYGDELLALIAAARPSGSGSPPDG
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgccctcaactcccaacgccccgaccgatagggccgatcgcgcgctggccgtgctgcat
tcggtgttcggtctgcccggctttcgtggcgcgcaggagaaggtggtccggcatgtcgcc
gagggcggcaattgcctggtgctgatgccgaccggcggcggcaagtcgctgtgctatcaa
ttgccggccttgctgcgcagaggctgcggcatcgtggtgtcgccgctgatcgcgctgatg
cgcgaccaggtcgcgggcctgctcgaggccggcgtcaacgccgcagtcctgaactcgacg
ctgtcgcgcgaggaagccgacgaggtcgagcggcggctgatatcaggcgatctcgatttg
ctctatgtcgcgcccgagcggctggtgacgccgcgctgcctgtcgctgctggagcgcgct
gatatcgcactgtttgcgatcgacgaggcgcattgcgtgtcgcaatgggggcacgacttc
cgccctgaatatatcggcctctccgtcattgccgagcgctttcccgacgtgccgcgtatc
gcgctgaccgcgaccgccgacgaactgacccgcaaggaaatcgccgagcggctcagcctc
actgatgcgccgcaattcgtggcgagcttcgatcgtcccaacatccgctacgagatcgtc
gacaagaacaacggaccggcccagctcaaggccttcatcaaggagcgccacccgggcgat
gccggggtcgtctactgcctgtcgcgcgccaaggtcgaggacaccgcggccgcgctgacc
gaggccggcatcaccgcgatcccctatcacgccgggctcgacgcaggcgttcgcgcccgg
aaccaggaccgcttcatcaacgaggacggcgtggtagtcgtagccacggtcgcgttcggc
atgggcatcgacaagccggacgtgcgcttcgtcgcccatctcgatctgccgaagagcatt
gaggcctactaccaggagaccgggcgcgcggggcgcgacggcaagccctcgaccgcctgg
atggcctatggcctgtcggacatcgtgcagcaacgccgcatgatcgacgagtccaccggc
gcggaggcgttcaagcgggtgtcgatccgcaagctcgacgcgctggtggcgctggccgag
accgccggctgccggcgcaaactgctcttgagctatttcggcgagagtccagcgggcgac
aattgcggcaattgcgacaactgcgtgtcaccgccgaagatgcgcgacggcaaggtgatc
gcgcagaagctgttgtcctgcgcctatcgcaccgggcagcggttcggcgccatgcacctg
atcgacgtgctggtgggacgcgcgaccgagcgcgttaagcagttcggacatgatcaattg
tcagtgttcggtatcgggcgtgagctcaatgagaagcagtggcgcgcggcgctgcgccag
ctggtggcgatgggccatcttgctcccgacagcgaggcctatggcgcgctgaagttcacc
gaaacgtcgcgcggcgtcctgaagggcgagaccccggtcatgctgcgcgaggagacggcg
cacgccgcgcgagccatccgcagcaagtcgcggcgcggcgagctggtaccgcggccgggc
ccggctgatgacgccaccctgctcgccagcctgcgcgcgtggcgcgcggagatcgcgcgc
aagcgcggcgtgcccgcttatgtggtgctgcacgacgccaccatcgacggcatcgcggcc
gcgcgtccgactacgtcaggacagctccgtggcataccagggattggcgacaagaagctc
gaacattacggcgatgagctgctggcgctgatcgcggcagcgaggccttctggatcagga
tcgccaccagacggttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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