KEGG T03096: BN85404740

Alteracholeplasma palmae: BN85404740

Entry

BN85404740        CDS       T03096

Symbol

topA

Name

(GenBank) DNA topoisomerase IA

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

apal Alteracholeplasma palmae

Brite

KEGG Orthology (KO) [BR:apal00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apal03032]
    BN85404740 (topA)
   03400 DNA repair and recombination proteins [BR:apal03400]
    BN85404740 (topA)
Enzymes [BR:apal01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BN85404740 (topA)
DNA replication proteins [BR:apal03032]
Prokaryotic type
  DNA Topoisomerases
   BN85404740 (topA)
DNA repair and recombination proteins [BR:apal03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BN85404740 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Toprim zf-C4_Topoisom Toprim_4 Toprim_2 OrfB_Zn_ribbon

Other DBs

NCBI-ProteinID:

CCV64051

UniProt:

U4KRC9

Position

500548..502380

AA seq 610 aa
MADKVIIVESPSKSKTISSYFDNKVTVLSSKGHIRDLAISGPGGLGIDVENGFMPMYQVI
KGKTVLVKDLIKQTKGKEVYLATDPDREGEAIAWHLAQVLNLDVTQKNRVIFREITKPAV
LKAIQEPSVIDEPLVESQETRRMLDRIIGFKLSSLLQKKIKSKSAGRVQSVALKLIVDLE
KERDAFVPEEYHTITAEFQNFKADYIIKKDYKIKAEEAKRIVDGSTNPFTVSKVEKKENK
RKAKQPFTTSTLQQDAINNLSMSSSRTMSVAQSLYEGIEIEGEHVGLITYMRTDSTRLSD
IFVTETQDFIKNYFGKEYLGEYKVKKSDNAQDAHEGIRPTSVLRTPESVEQYLSKDEFKL
YQRIYQRAVSSLMSDAVFSQTKVTLTTNGYDYLAEGVIRMFPGYQKLFDDSAKDKLLPDI
KENETYNAKKVEATQKFTTPPARFSEATLIKELEKLGIGRPSTYAQIIKTLKDRLYVELE
EKRFKPTKQGILTSDKLTEFFSNIINVEYTSNMEKELDEIAEHKVNGKVLLKDFYDRFIP
TLELADQKMEKIGPEVTDKICPLCGHQLVIRRSKHGEFLGCSNFPKCRHTENIETNPENK
EIIEENKQNE

NT seq 1833 nt +upstreamnt +downstreamnt
atggcagataaagtcattattgtggaatctccatctaaatctaaaacaattagtagttac
tttgataataaggtaaccgtattatcttcaaaagggcatattagagatttggctattagt
gggccaggtggactaggaatcgatgttgaaaatggatttatgcctatgtaccaagttatt
aaaggtaaaacggtattagttaaagatcttattaaacaaacaaaaggtaaagaagtttat
cttgcaaccgacccggaccgtgaaggtgaagcaattgcttggcatttagcacaagtatta
aatttagatgttacacaaaaaaatcgtgttatttttagagaaatcacaaaaccagctgtc
ttaaaggcaatccaagaaccatcagttattgatgaacctttagttgagtcacaagaaaca
agaagaatgcttgatagaattataggatttaaactatctagtttattacaaaaaaagata
aaatctaaatcagcaggacgtgtacaatccgttgccttaaaattaattgtagacttagaa
aaagaacgcgatgcgtttgtcccagaagaatatcatacaatcacagcagaatttcaaaac
tttaaagcagattatattattaaaaaagactataagattaaagcagaagaagctaaaaga
atcgtagatggatcaacaaatccatttacagtttctaaggtagaaaaaaaggaaaacaaa
agaaaagcaaaacaaccttttacaacatccacattacaacaagatgcaattaataatcta
tctatgtcatctagtagaacaatgagcgttgctcaaagtttatatgaaggtattgaaatt
gagggagaacatgtagggttaattacttatatgagaacggattctacaagactttcagat
atttttgttacagaaacacaagactttattaaaaactattttggaaaagagtacctaggc
gaatataaagttaaaaaaagtgataatgctcaagatgcccatgaaggaattagacctaca
agtgttttaagaacacctgaatcagtagaacaatacttatcaaaagatgagtttaaactc
tatcaaagaatttatcaaagagcagtttcaagcttaatgtctgatgcagtatttagtcaa
acgaaagtaacccttacaactaacggatatgattatttagcagaaggtgttatcagaatg
tttccaggatatcaaaaattatttgatgatagtgcaaaagataaactgcttcctgatata
aaagaaaatgaaacgtataatgctaagaaagtagaggctacacaaaagtttactacgcca
cctgcaaggttctcagaagcaaccctgattaaagaattagaaaaattaggaataggtaga
ccttctacgtatgctcaaattattaaaaccttaaaagatcgcttatatgttgaattagaa
gagaaaagatttaaaccaactaaacaaggtattttaacttctgataaattaacagaattc
tttagtaacattatcaatgttgaatatacatctaatatggaaaaagaattagatgagatt
gctgaacataaagtgaatggtaaagtattattaaaagacttttacgatcgctttattcca
actctagagttagctgatcaaaaaatggaaaaaattgggccagaagtaacagataagatt
tgtcctttatgtgggcaccaattagttattagaaggagtaaacatggagaattcttaggt
tgctctaactttcctaaatgtagacatacagaaaacatagagacaaacccagaaaataaa
gaaataattgaagaaaataaacaaaatgaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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