KEGG   Anas platyrhynchos (mallard): 101794091
Entry
101794091         CDS       T02816                                 
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03015  mRNA surveillance pathway
apla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101794091 (PABPC1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101794091 (PABPC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apla03019]
    101794091 (PABPC1)
   03041 Spliceosome [BR:apla03041]
    101794091 (PABPC1)
Messenger RNA biogenesis [BR:apla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     101794091 (PABPC1)
   mRNA cycle factors
    Stress granule specific factors
     101794091 (PABPC1)
Spliceosome [BR:apla03041]
 Complex C
  Other components
   Complex C specific factors
    101794091 (PABPC1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_5 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 101794091
NCBI-ProteinID: XP_027308335
Ensembl: ENSAPLG00000001129
EnsemblRapid: ENSAPLG00030026459
Position
2:23609757..23625178
AA seq 637 aa
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPANQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq 1914 nt   +upstreamnt  +downstreamnt
atgaaccccagcgcccccagctaccccatggcgtccctctacgtgggggacctgcacccc
gatgtgaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctcgctcggatacgcctacgtcaacttccag
cagccggccgacgctgaacgagctttggataccatgaactttgatgtcattaaaggcaaa
ccagtgcgcatcatgtggtctcagcgcgatccatctctacgcaaaagcggtgtaggaaac
atcttcatcaaaaacttggacaaatcaattgataacaaagcgttgtatgacacattttct
gcttttggaaacatcctttcttgtaaggtggtatgtgacgaaaatggatccaagggttat
ggattcgtacattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtattcgttggaaggtttaaatcccgtaaggaacgtgag
gcagagcttggagccagagcaaaggaattcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgccttaagtgtg
aaagttatgactgatgagagtggaaaatccaaaggcttcggcttcgttagttttgaaaga
catgaagatgcccaaaaagctgtagatgagatgaatgggaaggagctcaatgggaaacaa
atctatgttggccgggctcagaaaaaagtggaaagacagacggagctgaagcgtaaattt
gagcaaatgaagcaggacaggatcaccagataccagggcgtaaacctttacgtgaaaaat
cttgatgatggcattgatgatgaacgccttcgaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggtgggcgcagcaaaggatttgggtttgtttgcttt
tcatcaccagaagaagccaccaaagctgtcacagagatgaatggtagaattgtggctact
aaaccattatatgtagctctagcgcagcgtaaagaagagcgccaggctcatctcaccaac
cagtatatgcagagaatggcaagtgtaagagcagtacctaatcctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctgctaatcaacttgctcaacttgctagacctagtcctcgctggactgct
cagggtgccagacctcatccattccaaaacatgcctggtgctatccgcccagcagcgccc
agaccaccatttagtaccatgagaccggcttcttcacaagttccacgagtcatgtcaacg
cagcgtgttgctaatacatcaacacaaacaatgggtccacgtcctgcagcagcagctact
gcagctactcctgctgtacgcacagtaccacaatacaaatatgctgcaggtgttcgcaat
cctcagcagcatcttaatacacagccacaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaaccattgactgcttccatgttggcttctgccccaccgcaagaacaaaag
cagatgttaggtgaacgtctatttcctctcattcaaagcatgcaccctactctggcgggt
aagatcactggtatgctgttggagattgacaactctgaactccttcacatgctcgagtct
cctgaatctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagttaataaccccactggggttccaagtgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (55)   

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