KEGG   Anas platyrhynchos (mallard): 101800129
Entry
101800129         CDS       T02816                                 
Symbol
RAD50
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03440  Homologous recombination
apla03450  Non-homologous end-joining
apla04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    101800129 (RAD50)
   03450 Non-homologous end-joining
    101800129 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    101800129 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apla03032]
    101800129 (RAD50)
   03400 DNA repair and recombination proteins [BR:apla03400]
    101800129 (RAD50)
DNA replication proteins [BR:apla03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    101800129 (RAD50)
DNA repair and recombination proteins [BR:apla03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     101800129 (RAD50)
    BRCA1-C complex
     101800129 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     101800129 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook SbcC_Walker_B SMC_N AAA_21 NPV_P10 DUF2703
Other DBs
NCBI-GeneID: 101800129
NCBI-ProteinID: XP_038042461
Ensembl: ENSAPLG00000011856
EnsemblRapid: ENSAPLG00030010518
Position
14:complement(1662463..1683137)
AA seq 1316 aa
MARIEKMSILGVRSFGIEDKDKQIITFHNPMTILVGPNGAGKNGKTYTIIECLKYVSTGD
FPPGTKGNSFVHDPKVAHETDVRAQIRLQFRDVNGELVAVQRSMVCTQKNKKTEFKTLEG
VITRTKHGEKVSLSSKCAEIDREMISALGVSKSVLNNVVFCHQEESNWPLSEGKALKQRF
DEIFSATRYIKALETLRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLNNREAQLSA
SKENVKSIESQLDPLKCSLAAVEKNLMKVMLLDNDVKALESRRRQMDKDNQDLQQKMEKV
FQGTDEQLRDRYQNHQRTVKEKEKRLSDCKRELDRAIKECQRFNSEKSELLVERGRLQLQ
ADRHQEHIKTRDSLIQSLAAQLELDGFELSPLNERQITNFHRLLKERQARDTETANHLMR
EFAQKEAMKQKQIDEIRDKKTGLERTIDLKSDIQYKRQAELKNVKHELQQLEGSSGRIVE
LDEEIVKTEHELEKAERSSNVETLELEVQTLQNEKINLDKSLRKLDQEMEQLNLHTTTIT
QMEMLKKDKADKEEQIRKVKSRHSEELTLLLGYFPNKKQLEDWLHGKNREINETRDRHAK
LNKQLASAEQQKNFISAELRRKEEQLSSYEAKLFDVCGSQDFDSNLNKLQDEIEKSSKQR
AVLAGATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTE
SELKRREKKRDEMMGLKPIRQTVVELQERDIPDLRNKLQTVNRDFARLKGEIEEQETLLQ
TVLSEKEGANACLQDITLMERYQADIRDVERKIAQQEAKLLGVDLSRTVLQVSQEKQEKK
HLWDTVTSKIELNQKIKQDQQNQIQQLKSTVNELRAEKLQISSSMQRRQQLEEQIVELTT
EFQSLHREIKEAKEQVFPLHETLEKLQQDKEDLINKRTATNKETQEKINTIKEKVKDINK
YMKEIESYIQEGKEDYKKQKESELDEVNSQLVACEKQKEKISKEMEIIRQDIDTQKIQER
WLEDNLTLRKRNEELKEVEDNINRLMKEMGEMKVPQMKNEQKNLEEKIEALKRNHHVALG
RQRGFEEEIVRFKKELRESQFKDAEEKYREMMIVMRTTELLNKDLDTYYKALDKAIMTFH
SMKMEEINKIIRDLWRNTYRGQDIEYIEIRSDADENVSAADKRRSYNYRVVMIKGDTALD
MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKNR
TKQRNFQLLVITHDEDFVELLGRSEYVETFYRIRKNDDQCSEIMKCSVSSLGSYVH
NT seq 3951 nt   +upstreamnt  +downstreamnt
atggcaaggattgagaaaatgagcatcctcggcgtgaggagttttggcatagaggataaa
gacaaacagattatcactttccataatccaatgactattctggtgggaccaaatggtgca
gggaaaaacggtaagacttacactatcattgagtgccttaaatatgtgtccactggagat
tttcctcctggaaccaaaggaaattcatttgttcatgatccaaaggttgcccatgaaact
gatgttagagctcagattcgattacagtttcgagatgttaatggagagcttgtagctgtc
caacgatccatggtgtgtacccagaaaaacaagaaaacagagtttaaaacacttgaaggg
gtcattactagaacaaagcatggtgagaaggtcagtctcagttccaagtgtgcagaaatt
gatcgagagatgatcagtgcccttggtgtttccaaatctgtgctcaacaatgttgttttc
tgccaccaagaagagtccaactggccattaagcgaagggaaggccctgaaacaaagattt
gatgagatcttctcagcaacaaggtatattaaagcactggaaactctccgtcaggtacga
ctgaaacaaagcctaaaagtaaaagagtgtcagacagagctgaagtacctaaagcagaat
aaagaaaaagcacaggaaatccaggaccatcttaacaatagggaagctcagctgtctgct
tctaaggagaatgtaaaatctatcgagagtcagctggatcctttaaagtgttctctggca
gcagttgaaaagaatctcatgaaagtaatgttgctagacaacgacgtaaaagctctggag
agcaggaggaggcagatggataaggataatcaagacctgcaacagaagatggaaaaggtt
tttcaaggaacggatgaacagctaagggatagataccagaaccaccagagaacagtgaag
gagaaggagaagagattatcagactgtaagcgtgaattagatagggccattaaagaatgc
cagaggtttaacagtgaaaagtcagaactactcgttgaacgaggtcgtctacaactgcaa
gcagatcgtcaccaagaacacatcaaaacgagggattcattaattcagtctttggcagca
cagctagaattagatggttttgagctatcacctcttaatgaaagacagattaccaatttt
cacaggttattgaaggagagacaagcgagagatacagaaactgcaaatcacttaatgaga
gaatttgcacaaaaagaagcgatgaaacaaaaacagatagatgaaataagagataagaaa
actggattagaaagaaccattgatctgaaatcagatatccaatataagagacaagcagaa
ctgaagaatgtaaaacatgaattgcagcagttggaggggtcatcaggcagaattgtggaa
ttggatgaagagattgtcaagacagaacatgaactggagaaggctgagaggagcagcaat
gtagaaacacttgaactggaagtgcaaactctgcaaaatgagaaaataaacctggacaaa
agtcttcggaagctggatcaagagatggaacagttgaacctacataccacaacaattacc
caaatggagatgctgaagaaagacaaagcagacaaagaggaacagattagaaaagtaaaa
tcaagacattctgaagaactgacgttactgctggggtactttccaaataaaaaacaactt
gaagactggctccatggcaaaaatagagagattaatgaaacaagggacagacatgccaag
cttaacaaacaactggcatcagcagaacaacagaagaattttatcagtgctgaactaaga
agaaaagaagaacagttgtctagctatgaagcaaaactttttgatgtttgtggaagccaa
gattttgacagtaacctgaacaaacttcaagatgaaattgaaaaaagttcaaaacagcga
gctgtgcttgctggagccacagcagtttattcacagttcattacacaactaacagaagag
aaccagtcgtgttgtccagtttgtcaaagagtttttcaaacagaggctgaactgcaagat
gtaattagtgatcttcagtctaagttgcgtcttgcaccagacaaattgaagtcaacagag
tctgagcttaaaagaagagagaaaaaacgtgatgaaatgatgggtcttaaaccaattagg
caaacagtagtggaactccaagaaagggacataccagacttgaggaacaagctgcaaact
gtgaacagggattttgcacgcctgaagggtgagatagaagagcaggaaacactcctgcag
acagttctgtctgagaaggaaggtgctaatgcatgtttacaggacataacactaatggaa
aggtaccaggctgatattagggatgttgaaagaaaaattgctcagcaggaggctaagctg
ctaggggtcgatttaagtagaactgttctacaagtaagccaagaaaaacaagagaagaaa
cacttatgggatacagttactagtaaaattgagttaaatcaaaaaatcaagcaagaccag
cagaatcagattcagcagcttaagagtacagttaatgaacttagagcagagaaacttcag
atttccagcagcatgcagcgtcgtcaacaactggaggagcaaatagtggaattaaccact
gagtttcagtccttacatagagagattaaggaagcaaaagaacaggtatttcccctacat
gaaactttagaaaaactgcagcaagacaaggaggatctaattaataaaaggactgcaact
aataaagaaacacaagagaagataaataccataaaagagaaagttaaagatataaacaag
tacatgaaagaaatcgaaagctatattcaagaaggaaaggaagactacaagaagcaaaag
gagtctgaacttgatgaagtaaactctcaattagttgcctgcgagaaacagaaggaaaag
ataagtaaagagatggaaattattcgacaagatattgacactcaaaagatacaggaaagg
tggctagaggataatctgactttgaggaagcggaatgaagaattaaaagaagttgaagac
aatataaatagacttatgaaggagatgggagaaatgaaagtcccgcagatgaaaaatgaa
caaaaaaatttagaggagaaaatagaagctctgaaaagaaaccatcatgttgcacttggc
cgacagcgtggatttgaggaagagattgttcggtttaaaaaggaacttcgagagtcacaa
ttcaaagatgcagaggaaaaatacagggagatgatgattgttatgagaacaacggagcta
ttgaacaaggatttggacacttattacaaggctcttgataaagcaataatgacatttcat
agcatgaagatggaagaaattaacaaaataattcgtgacctttggagaaatacctacaga
ggacaagatattgaatatatagaaattcgctctgatgcagatgagaatgtttcagcagct
gataagagaagaagctacaattatagagtagtaatgataaagggagatacagcactggat
atgagaggaagatgtagtgctgggcaaaaggtgcttgcttctcttattattcgtcttgct
ctagcagaaacgttctgtctcaactgtggcatattggcactagatgagcctaccaccaat
cttgatcgagaaaacattgagtctcttgcacatgccctcgtggagataataaaaaaccgc
acaaaacagcgtaactttcagcttctggtgataactcatgatgaagattttgttgaactg
ctgggccgttctgaatatgtggagaccttctacaggatacggaagaacgatgaccagtgc
tctgagatcatgaaatgcagtgtcagctcccttggctcatatgttcattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (62)   

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