KEGG   Anas platyrhynchos (mallard): 101789567
Entry
101789567         CDS       T02816                                 
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
  KO
K12646  ATP-dependent RNA helicase DDX58 [EC:5.6.2.6]
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla04622  RIG-I-like receptor signaling pathway
apla04623  Cytosolic DNA-sensing pathway
apla05164  Influenza A
apla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:apla00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    101789567 (DDX58)
   04623 Cytosolic DNA-sensing pathway
    101789567 (DDX58)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    101789567 (DDX58)
   05168 Herpes simplex virus 1 infection
    101789567 (DDX58)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:apla04054]
    101789567 (DDX58)
Enzymes [BR:apla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101789567 (DDX58)
Pattern recognition receptors [BR:apla04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   101789567 (DDX58)
SSDB
Motif
Pfam: RIG-I_C CARD_2 RIG-I_C-RD DEAD ResIII Helicase_C Peptidase_S51 AAA_19
Other DBs
NCBI-GeneID: 101789567
NCBI-ProteinID: NP_001297309
Ensembl: ENSAPLG00000015091
EnsemblRapid: ENSAPLG00030012125
UniProt: D3TI84
Structure
Position
Z:69037671..69061400
AA seq 933 aa
MTADEKRSLQCYRRYIERSLNPVYVLGNMTDWLPDELRERIRKEEERGVSGAAALFLDAV
LQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVA
LIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYR
ASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPV
YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA
TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED
GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAK
NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL
MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF
ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIA
LSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG
VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG
NVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKK
IHNLQMKERVLRDSRRKEIKPKVVEGQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF
KERYTTKPHKKPMQFDGFEKKSKMYCRNNNCQHDWGITVKYLTFDNLPVIKIKSFVMEST
ATGTQMDFQKWKSINSSLKNFDVEEMSNLYPPF
NT seq 2802 nt   +upstreamnt  +downstreamnt
atgacggcggacgagaagcggagcctgcagtgctaccgccgctacatcgagcggagcctc
aacccggtctacgtgctgggcaacatgacggactggctgcccgacgagctgcgggagagg
atccgcaaggaggaggagaggggggtgagcggcgccgccgcgctcttcctggacgccgtg
ctgcagctggaggcccgggggtggttccgagggatgctggacgcgatgctggccgcaggt
tacacaggactggcagaagcaattgagaactgggacttcagcaaactggaaaaactggag
ttacacagacagctgttgaagcggatagaggcaacaatgttagaagtcgacccagtagcg
ctcattccctatataagcacatgcctgatagacagggagtgtgaagagattcagcagatt
agtgaaaacagaagcaaagcagcaggcataactaaactcattgaatgtctctgtcggtcg
gataaggagcactggccaaaaagccttcagctggcactagataccacaggatattaccgt
gcaagtgaactgtgggatataagagaagataatgccaaagatgttgacagtgaaatgaca
gatgcctctgaggactgccttgaagccagtatgacatattctgaagaagcagaacctgat
gataatctcagtgaaaatcttggttcagctgcagaaggaattggcaaacctccacctgtc
tatgaaacaaagaaggctcggagctaccagattgaacttgcacagcctgctatcaatggg
aaaaatgccttaatatgtgcccctactggatctggaaaaactttcgtctcaattctgatt
tgcgaacaccatttccaaaacatgcctgcaggacgaaaggcgaaagttgtctttcttgca
actaaagtcccagtgtatgaacagcagaaaaatgtcttcaagcatcattttgaaagacaa
ggatactctgttcaaggaattagtggtgaaaatttttcaaatgtctctgtagaaaaagtt
atagaggatagtgacatcatcgtagtgacaccccagatcctggtgaatagcttcgaggat
gggacccttacctcgctctccattttcactctgatgatattcgatgagtgccacaacact
acaggcaaccacccttacaatgtgttaatgaccaggtatctggagcagaaatttaactct
gcaagtcagctgccacagattttaggtttgactgcttctgttggagttggtaatgccaag
aacattgaggaaacaatagagcacatctgtagtctctgctcctaccttgacatacaggcc
atatccactgtcagagagaacatacaagaactgcaaaggttcatgaacaagccagaaata
gatgtcagattggttaagaggcgaattcacaatccctttgcagccattatctcaaatttg
atgtccgagacagaggcactgatgaggacaatttactcagtggatactctctcccaaaac
agcaagaaagatttcggaacacagaactatgaacactggatagttgtcactcagaggaaa
tgcagactgctgcaactagaagacaaagaggaggagagcaggatatgtagagcccttttc
atttgcactgaacacctgcggaaatacaatgatgccctcatcatcagtgaagatgcccgc
atcatagatgctttatcctacctgaccgagtttttcacaaatgtcaagaatggaccatac
acagaattagagcagcacctgacggccaaatttcaagagaaagaaccagaactgattgcc
ctttcaaaagacgaaacaaatgagaatcctaaactggaagagcttgtctgcatcctggat
gatgcgtaccgctataacccacagactcgcactcttctctttgctaagacaagagcttta
gtatccgctttgaagaagtgtatggaggaaaaccctattcttaactacataaagccaggt
gttttgatggggcgcggaagaagagatcaaacaacaggtatgaccctcccaagccagaag
ggtgtgctggatgcgttcaaaaccagcaaggacaacaggctgctcattgctacatctgtt
gctgatgaaggcattgatattgtccagtgcaaccttgttgtgctctatgaatactccggt
aacgtgaccaaaatgatccaagtcagaggtcgtggaagggcagcaggcagcaagtgcatc
cttgtgacaagcaaaacagaagtggttgagaatgaaaaatgcaaccgttataaggaagaa
atgatgaataaagctgttgaaaagatccagaaatgggatgaagaaacatttgcaaaaaag
atacataatctgcaaatgaaggaaagggtgttacgagattccaggaggaaagaaataaaa
cctaaagtagtggaaggccaaaagaacctcctgtgtggaaaatgcaaagcatatgcctgc
agtacagatgacatcaggattataaaggactcccatcacattgtcctaggagaagcattc
aaggagcgttatacaacaaagcctcataagaaaccaatgcagtttgatggttttgagaaa
aaaagcaagatgtattgccgaaataataattgccagcatgattggggaatcacagtgaag
tacctgacatttgacaatctaccagtgatcaaaatcaaaagcttcgtaatggagagtact
gcaactggaacacaaatggactttcagaaatggaaaagcattaattcttctttgaagaat
tttgatgttgaagaaatgtccaacttgtacccaccattttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
3D Structure (6)   
   PDB (6)   
Protein domain (8)   
   Pfam (8)   
All databases (78)   

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