KEGG T00983: Apar

Lancefieldella parvula: Apar_1093

Entry

Apar_1093         CDS       T00983

Name

(GenBank) DNA topoisomerase type IA central domain protein

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

apv Lancefieldella parvula

Brite

KEGG Orthology (KO) [BR:apv00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apv03032]
    Apar_1093
   03400 DNA repair and recombination proteins [BR:apv03400]
    Apar_1093
Enzymes [BR:apv01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Apar_1093
DNA replication proteins [BR:apv03032]
Prokaryotic type
  DNA Topoisomerases
   Apar_1093
DNA repair and recombination proteins [BR:apv03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Apar_1093

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim zf-ribbon_3 Zn_ribbon_recom HMBD

Other DBs

NCBI-ProteinID:

ACV51521

UniProt:

C8W7T0

Position

complement(1236350..1238863)

AA seq 837 aa
MILVVTEKNDAAQQIARLLSESGKPEADKVYNTPVYRFRRGGEDYVAIGLRGHILQPDFP
LALKFDKEEGWYGETAEGEHLPADVPDGLERPPYKVKRKPFMADGVDLKGWKIPSLPYLI
WAPVDKQPAEKEIIRALKNLAKKAESVIIGTDFDREGELIGSDALAQVLSVNPNLAVFRA
RYSAFTKTEIETAFNNLVDLDYNLAAAGESRQYIDLIWGAVLTRYLTTARFGGLGNTRSA
GRVQTPTLALVVERERERLAFKPEDYWVISGVASPEDDDEATFKMVHQTARFWDQAEADT
VYDVVKDQTQATVVEIESRSRKQQPPAPFNTTSLQAAAAAEGISPARTMRLAESLYMDGL
ISYPRVDNTVYPSSLDLKDCVRTLSAVPQYAPTCKKLLGQPKLHATRGKQESTDHPPIYP
TAAANPDSLQPAAWKLYNLIARRFLATLMGPATMSGTKITLDVAGQPFVANGTVLAEPGF
REIYPFGLKKDDQIPDVGEGEIVSIKSLSLDAKQTEPPARYSQGKLIQEMEKRGLGTKST
RASIIDTLYQRKYLKNDPVEPSQLGMAIVDALSQFAPHITSPDMTAELESDMTSVAEGKD
TRDGVVTHSRSLLAGMIDVLIDHKEDLSEAIADAVTADAKVGTCPKCGKDLVAKSSLKTR
GSFVGCMGWPDCDVTYPLPQGRVEPLEGEAGVCPECGAPRVKVQPFRQRAYETCINPACP
TNSEPDLIVGECPTCKANGKHGDLVAHKSERTGKRFIRCTNYEECETSYPLPARGKLEKT
DEVCPDCGAPMVVVTTQRGPWKLCPNYDCPGKEKKTAPRRGARKSTKSTKSTKAAKK

NT seq 2514 nt +upstreamnt +downstreamnt
ttgattttagttgttaccgagaaaaacgacgcagcgcagcagattgctcgccttctgtct
gaatcaggtaagcctgaggcagacaaggtatacaacactcctgtttatcgttttagacgc
ggtggcgaggattatgttgctattggtcttcgtggtcatattctgcaacctgattttcct
ttagctttgaagtttgataaggaagagggttggtacggagaaactgcagaaggggagcac
cttcctgcagacgttccagatggtcttgagcgtcctccttacaaggttaagcgcaagcct
tttatggcagatggcgttgaccttaagggctggaaaattcccagcttgccgtatttgatt
tgggctcctgtagataaacaacctgcagaaaaagagatcattcgagcgctcaagaatctt
gctaagaaagcagagtctgtcatcatcggtacagactttgaccgtgagggtgagcttatt
ggttctgatgcattggcacaggttctctcggttaatcctaacctggcggtatttcgtgct
cgctactctgcttttactaagacagagattgagactgcctttaataacctggtagatctt
gactataacttggctgcagcaggtgagtccagacagtacattgatcttatttggggtgcg
gtattaacccgttatttgactactgcacgctttggtggtctgggcaatacgcgctctgct
ggtcgtgttcagactcctacgctggcacttgttgttgagcgtgagcgtgagcgtctggcg
tttaagccagaagattattgggtcatttctggtgttgcttctccagaagatgatgacgaa
gcaacgttcaagatggttcaccagactgcaaggttctgggatcaggctgaagcagataca
gtttatgacgttgtgaaagatcaaacgcaggcaacggttgtcgagattgagtctcgtagc
agaaagcagcagccaccagctccatttaacactacatcgctgcaagcagctgcagctgca
gagggtatctcgccagctagaactatgcgtttggcagagtccttgtacatggatggctta
atttcgtatccgcgtgttgataacacggtgtatccaagttctcttgacctgaaagattgt
gtgcgtacgttatctgcagttcctcagtatgcacctacctgtaaaaagcttttgggtcag
ccaaagctccatgcaactcgtggcaagcaggagtctaccgaccacccaccaatttatcca
acggcagcggcaaatccagattctttgcagcctgcagcttggaagctttataaccttatt
gctcgaaggttcttagcaacccttatgggtccagctactatgagtggtaccaagattaca
cttgatgttgctggtcagccttttgttgcaaacggaacggtactggcagagccaggcttt
agagaaatttatccttttggccttaagaaggacgatcagattcctgatgtaggcgaggga
gagattgtctctattaagtctttatcgcttgacgctaagcagacagagccacctgctcgc
tatagtcagggtaagcttattcaagagatggagaagcgcggtctgggtacaaagtctacg
cgtgcttccatcattgatacgctttatcagcgtaaatacctcaagaatgatcccgttgag
ccaagtcagcttggtatggcaattgtcgatgctctttcgcaatttgcaccacacattacc
tcgcctgatatgacggctgagcttgaatccgatatgactagcgttgctgagggcaaagat
acgcgtgatggcgttgttacgcactcaagatccctgcttgcgggcatgattgatgtgctc
attgatcataaagaagatctgtctgaggccattgcggatgcagtcactgctgacgcaaag
gttggaacctgtcctaagtgtggcaaggatttggttgccaagagctctctaaagactcgt
ggaagctttgttggctgcatgggttggccagactgtgatgttacgtatccactgcctcag
ggacgcgttgaaccgcttgagggagaggctggcgtctgcccagagtgtggtgctcctcgt
gtaaaggttcagccgtttaggcagcgtgcgtatgagacttgcatcaatccagcttgtcct
acaaattcggagccagatcttattgtgggcgagtgcccaacttgcaaagcaaatggcaag
cacggagacttggtggctcataagtcagagcgcacgggcaagcgttttatccgctgtacc
aactacgaggagtgcgaaacaagttatcctctacctgctcgtggaaagcttgagaagacc
gatgaggtttgtccagactgcggcgctcctatggtagttgttactactcagcgtggtcct
tggaagctgtgcccaaattacgattgccctggcaaagaaaagaaaactgccccgcgcaga
ggtgctcgtaagagtactaagagcaccaaatccaccaaggcagcaaaaaagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (48)   

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