KEGG   Psychromicrobium lacuslunae: UM93_01585
Entry
UM93_01585        CDS       T03775                                 
Name
(GenBank) polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
ari  Psychromicrobium lacuslunae
Pathway
ari03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ari00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UM93_01585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ari03019]
    UM93_01585
   03016 Transfer RNA biogenesis [BR:ari03016]
    UM93_01585
Enzymes [BR:ari01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     UM93_01585
Messenger RNA biogenesis [BR:ari03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     UM93_01585
Transfer RNA biogenesis [BR:ari03016]
 Prokaryotic type
  tRNA degradation factors
   UM93_01585
SSDB
Motif
Pfam: RNase_PH PNPase S1 KH_1 RNase_PH_C KH_2 PCB_OB KhpA-B_KH DUF1773
Other DBs
NCBI-ProteinID: AJT42782
UniProt: A0A0D4C272
Position
340012..342285
AA seq 757 aa
MEGPEIQFAEAVIDNGRFGKRTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPRE
GFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQ
IVVTVLAINPDELYDVVAINASSMSTQLSGLPFSGPIGGVRVALIADQNGGSQWVAFPRH
SELENAVFDMVVAGRVAGDDVAIMMVEAEATDNSWKLIKENGATAPTEEIVAEGLEAAKP
FIKVLCEAQADLAARAAKPIVEFPIFLDYEQDAYDAVETAAASKLAEVFQIADKQERDNA
SDALKDEVVGQLAEQFEGREKELSAAFRSVTKKVVRQRILKDQVRIDGRGLTDIRQLTAE
VEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPEKTKRYMHNYNFPPYSTGET
GRVGSPKRREIGHGALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSL
LNAGVPLKAPVAGIAMGLVSDEVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQ
LDTKLDGIPASVLAAALKQAREARLHILGVLNAAIDVPDELSEFAPRVIAVKIPVDKIGE
VIGPKGKMINQIQEDTGADISIEDDGTVYIGATDGPSADAARSAINAIANPQVPEIGERY
LGTVVKTTTFGAFVSLTPGKDGLLHVTELRKINDGKRVDNVDDVVSVGQKIQVEITKIDD
RGKLSLSPVIAEAEGEATEAVAEAAAAEAEAADVQAN
NT seq 2274 nt   +upstreamnt  +downstreamnt
ttggagggtcccgaaatccaattcgccgaagccgtgatcgataacggtcgctttggcaaa
cgcactatccgctttgaaaccggtcgtttggctcagcaggccgccggcgccgcgatggtt
tacatcgacgacgacactgcgctgctctccgccaccaccgcgggcaagcagccgcgtgaa
ggcttcgacttcttcccgctcaccgtcgacgtggaagagcggatgtacgccgctggccgg
atccccggttcgttcttccgtcgcgaaggccgtccctcaaccgaggccatcctggcttgt
cgtctgatggaccgcccgttgcgccccgccttcgtgaagggcctgcgcaacgaagttcag
atcgtggtcaccgtgctcgcgatcaaccccgatgagctgtatgacgtggtcgctatcaac
gcttcctcgatgtccactcagctttccggtctgccgttctccggcccgattggcggcgtc
cgcgtcgctctgatcgcagatcagaatggtggcagccagtgggttgccttcccacggcac
tccgaactggagaacgccgtcttcgatatggtggttgccggtcgagttgctggcgacgat
gtcgcgattatgatggtcgaggcagaggcgaccgataactcctggaaactgatcaaggaa
aacggtgccaccgcgccgaccgaagagatcgttgccgagggcctggaagcggctaagccg
ttcatcaaggtgctttgcgaagcgcaggctgatttggccgctcgcgccgccaagccgatc
gtcgaattcccgatcttcctggattacgagcaggatgcttacgacgccgttgagaccgct
gccgcgagcaaactcgccgaggtcttccagatcgccgataagcaggagcgggacaacgcc
tctgacgcactcaaggacgaagtcgttgggcagctggccgagcaattcgaaggccgtgag
aaggagctttccgcagccttccgctcggtcaccaagaaggtggtgcgccagcgcatcctg
aaggaccaggttcgcatcgacggccgtggcctgaccgatattcgccagctcaccgccgag
gtcgaggtgctgcctcgagtgcacggttcggcaatcttcgagcggggtgaaacccagatc
atgggcgttaccacgctgaacatgctcaagatggaacagcagatcgactcgctctccccg
gagaagacgaagcggtacatgcacaactacaacttcccgccctactcgaccggtgaaacc
ggccgggttggctcgcccaagcgccgtgaaatcggccacggtgctctcgctgagcgtgcc
ctggtgccggtgctgccctcgcgtgaagagttcccctacgcgatccgtcaggtctccgag
gcgctcggctccaacggttcgacctcaatgggctcggtctgcgcttcgacgctgtcgctg
ctcaacgccggtgtgccgctgaaggctccggttgctggtatcgcgatgggcctggtgtcc
gacgaggttgatggccaaacccgttacgccgcgctgaccgacatcctgggcgctgaagat
gctttcggcgatatggacttcaaggtggctggcacctccgagttcgttaccgctattcag
ctcgacaccaagctcgatggcatcccggcctccgtcttggctgccgcgctcaagcaggct
cgcgaagcccgcttgcacattctcggcgtgctcaacgctgcgatcgacgtaccggatgag
ctctctgagtttgcgccccgcgttatcgcggtcaagatcccggttgacaagatcggcgag
gtcatcgggcccaagggcaagatgatcaaccagatccaggaagacaccggcgcggatatc
tccatcgaggatgacggcacggtgtacatcggggccaccgacggcccctcagctgacgct
gctcgttccgcgatcaacgcgatcgccaacccgcaggttcccgagattggtgaacgctac
ctgggcacggttgtcaagaccaccacctttggtgctttcgtctcgctgaccccgggcaag
gacggcctgttgcacgtcaccgaattgcgcaagatcaacgatggcaagcgggttgacaac
gtcgacgacgtggtctccgtcggtcagaagatccaggtggaaatcaccaagatcgacgac
cgtggaaagctctcgctctcgccggtaatcgcggaagctgagggcgaagctacagaagcc
gttgccgaggccgctgcggccgaggcagaggctgccgacgttcaggccaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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