KEGG   Arthrobacter sp. Rue61a: ARUE_c31690
Entry
ARUE_c31690       CDS       T02215                                 
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
arr  Arthrobacter sp. Rue61a
Pathway
arr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:arr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ARUE_c31690 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arr03019]
    ARUE_c31690 (deaD)
   03009 Ribosome biogenesis [BR:arr03009]
    ARUE_c31690 (deaD)
Enzymes [BR:arr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ARUE_c31690 (deaD)
Messenger RNA biogenesis [BR:arr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ARUE_c31690 (deaD)
Ribosome biogenesis [BR:arr03009]
 Prokaryotic type
  rRNA helicases
   ARUE_c31690 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter HEM4
Other DBs
NCBI-ProteinID: AFR30051
Position
complement(3476306..3478486)
AA seq 726 aa
MTENLNENFDAESADVATTESADVAETSAPAEAEAPAAAAAPVETVAAETAAPAFTEAPA
PKAEEEEEEGVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTG
KTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPV
YGGSAYGPQLAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADD
VEQIFQQTPETRQVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMG
PHKLDALTRILEVEEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVD
ALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFM
TPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLESEDVAAFRDLISS
YEEEHNVPASEIAAALAVMAQGGQPLLVKELPAAPEYQKRERSKDGFGSRGPTRALTEGN
ATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALS
RTRIGGELINLELDNGRRPSGDRGGYSGGGAGGRGGYGDRENRGGGNFKGSGGFKKDFRK
SDGERTSADRGGRSYSDRSERTAGSFGDRDRGQASGSRFGGHGDGARKPRTGGEGSNRDF
NRKGKW
NT seq 2181 nt   +upstreamnt  +downstreamnt
atgaccgaaaatctcaacgaaaacttcgacgctgagtccgctgatgtagcgaccaccgag
tccgctgatgtagcggagacctccgctcccgccgaagctgaagcaccggctgctgccgct
gcccccgtcgagaccgttgcagctgagactgcagcccccgccttcaccgaagctcctgcc
ccgaaggcagaagaagaggaagaagaaggcgtccgcttcgtcgatcttggcatcgacgga
cgcgttctggccgccctgcaggacgtcggctacgaaaagccgtcccccattcaggcagcc
accatcccgctcctcctcgaaggccgcgatgttgtaggcctcgcacagaccggtaccggc
aagaccgcagctttcgctgttcctgccctgtcccgcctggctgaacttcacgacctcaac
ggcccgtcccgcaagacccaggcgcttgttctggctccgacgcgtgaactggccctccag
gttgctgaggcattcacctcctacgccaagcacattgatgacttcacggtccttcccgtt
tacggtggctcggcttacggcccccagctcgccggcctgcgccgaggtgcacaggttgtt
gtcggtacccccggccgcgtgatcgaccacatcgccaagggttccctggacctgtccgaa
ctccagtacctggtgctggacgaagctgacgaaatgctgcgcatgggctttgccgatgac
gttgagcagatcttccagcagactcctgaaacccgccaggttgccttgttctctgccacc
atgccgggccagatccgccgcatgtccaagcagtacctgaacaacccggctgagatctcg
gtgaagtccaagaccaccaccggcgccaacaccaagcagcgctacctccaggtcatgggc
ccgcacaagctggacgccctgacccgcatccttgaggttgaagagttcgacggcgtcatc
gccttcgtgcgcaccaagatggctaccgaggacctggccgacaagctcaaggcccgcggt
ttccaagctgccgccatcaacggcgacatcccgcagcagcagcgcgaacgcactgtggac
gcgctgaaggaaggccgcatcgacatcctggttgctaccgacgtcgcggcccgtggcctt
gacgttgagcgcatcagccacgtcatcaactacgacatcccccacgacaccgagtcctac
gtgcaccgcattggccgtacgggccgtgcaggccgttccggcgatgccatcctgttcatg
acgccgcgtgagaagtacctgctgcgttccatcgaaaaggccacgcgccagccggtggag
cagatgcacctgcccacagctgagaccgtgaacacgttgcgccttggcaagttcgccgag
cgcatcacggagaccctcgagtccgaggatgtcgcagcgttccgcgacctcatctcctct
tacgaggaagagcacaacgtgccggcctccgagatcgctgcagccttggccgtcatggcc
cagggtggacagcctttgctggtcaaggaactgcctgccgctcctgagtaccagaagcgc
gagcgctccaaggacggcttcggttcccgtggcccgacccgtgcgctcaccgagggcaac
gccacctaccggatcgccgtcggacgccgtcagcgcgtcatgccgggttccatcgttggt
gccattgccaacgaaggtggcatctcttccgcacagatcggtggcatcgacatccgctcg
gaccactccctggtggagctcccggcagacctgagccccgagcagctgcgcgcactgtcc
cgcacccgcatcggtggcgagctgatcaacctcgaactggataacggacgcaggcccagc
ggcgaccgtggcggttactccggtggcggcgctggtggacgcggtggttacggcgaccgc
gaaaaccgtggcggcggaaacttcaagggcagcggcggcttcaagaaggacttccgcaag
tccgacggcgagcgtacctctgctgatcgtggtggacgctcctacagcgaccgttcagag
cgcaccgcaggcagcttcggcgaccgcgatcgtggccaggccagcggttcccgcttcggt
ggtcacggtgacggtgcccgcaagccccgcaccggcggcgaaggcagcaaccgcgatttc
aaccgcaagggcaagtggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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