KEGG T04477: AUT26

Arthrobacter sp. ATCC 21022: AUT26_14840

Entry

AUT26_14840       CDS       T04477

Name

(GenBank) cold-shock protein

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

arz Arthrobacter sp. ATCC 21022

Pathway

arz03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:arz00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AUT26_14840
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arz03019]
    AUT26_14840
   03009 Ribosome biogenesis [BR:arz03009]
    AUT26_14840
Enzymes [BR:arz01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AUT26_14840
Messenger RNA biogenesis [BR:arz03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AUT26_14840
Ribosome biogenesis [BR:arz03009]
Prokaryotic type
  rRNA helicases
   AUT26_14840

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter

Other DBs

NCBI-ProteinID:

AMB41337

Position

complement(3271124..3273208)

AA seq 694 aa
MPDTLNENLDAATESAEAAVTTADAAETAETQPAAVETPASAPAAESAPAAEDEEEGVRF
TDLGLDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRL
AELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHMDDFTVLPVYGGSAYGPQLAGL
RRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQETPETRQ
VALFSATMPGQIRRMSKQYLNNPAEISVKSKTSTGSNIRQRYLQVMGPHKLDAMTRILEV
EEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALREGRIDILVAT
DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEK
ATRQPVEQMHLPTAETVNSLRLGKFAERITETLESEDVSLFRDLIASYEEEHKVPAAEIA
AALAVMAQGGQPLLVKDLPAAPEFQKRERSKDGFNSRGPSRTLTEGNATYRIAVGRRQRV
MPGSIVGAIANEGGISSSQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLEL
DTGRKPNRDGDRGGRGGNFKGNGGFKKEFRRHDGERSSADRGGRSYSERTSGSYGDRDRG
QSGGSRFGGHGDGARKPRGGGEGGHRDFNRKGKW

NT seq 2085 nt +upstreamnt +downstreamnt
atgccagacactctcaacgagaacctcgacgccgccactgaatctgccgaagcagcagtg
accaccgctgacgctgccgaaaccgccgaaacgcagccggccgccgtcgagacccccgct
tccgctcccgccgcagagtccgctcccgcagcagaagacgaggaagagggcgttcgtttc
accgacctcggccttgacggtcgcgtgctcgcagcccttcaggacgtcggctacgagaag
ccgtcgccgatccaggctgccaccattccgctgctgctcgaaggccgcgacgtcgtcgga
ctggcccagaccggtaccggcaagactgcagcattcgctgttcccgccctttcccgcctg
gctgagctgcacgacctcaacggcccctcacgcaagacccaggccctggtcctggccccg
acgcgtgaactcgccctccaggttgctgaagccttcacctcctacgccaagcacatggac
gacttcaccgtgctgcccgtctacggtggttcggcctacggtccccagctcgcaggcctt
cgccgcggtgcccaggttgttgtgggcacgccgggccgcgtgatcgaccacatctccaag
ggttccttggacctttccgaactccagtacctggtgctggatgaagccgacgagatgctg
cgcatgggctttgccgatgacgtggagcagatcttccaggagaccccggaaacccgccag
gtggccctgttctccgcgaccatgcccggccagatccgacgcatgtccaagcagtacctg
aacaacccggcggaaatctcggtcaagtccaagacctccacgggttccaacatccgccag
cgctacctgcaggtcatgggcccgcacaagctggacgcgatgacccgcatcctcgaggtt
gaagaattcgacggcgttatcgccttcgtgcggaccaagatggctaccgaggacctcgcc
gacaaactgaaggcccgcggtttccaggccgccgccatcaacggcgacattccccagcag
cagcgtgaacgcaccgttgacgccttgcgtgagggccgcatcgacatcctggtggctacc
gacgtcgccgcccgtggcctcgacgtggagcgcatcagccacgtggtgaactacgacatc
ccgcacgacaccgagtcctacgtccaccgcatcggccgtacgggtcgcgcaggacgcagc
ggtgacgccatcctcttcatgacgccgcgcgagaagtacctgctgcgtgccatcgagaag
gcgacccgccagcctgtcgagcagatgcacctgcccacggccgagaccgtcaactcgctg
cgcctgggcaagttcgccgagcgcatcacggagaccctcgagtccgaggacgtctcgctg
ttccgcgacctgattgcctcctacgaagaagagcacaaggtcccggccgcagagatcgct
gcagcgctggcagtcatggcacagggcggccagccgctcctggtcaaggaccttcccgct
gctcccgaattccagaagcgcgagcgttccaaggacggcttcaactcccgcggcccgtcc
cgcaccctcaccgagggtaacgcgacctaccggatcgcggttggacgccgtcagcgcgtg
atgcccggttccatcgtgggcgccattgccaacgagggcggtatctcgtcctcgcagatc
ggtggcatcgacatccgctctgaccactccctggttgaactgcctgcagacctcagcccg
gagcagctgcgcgccctgtcccgcacccgcatcggcggcgaactgatccacctcgagctg
gacacgggacgtaagccgaaccgtgacggagaccgtggcggtcgtggcggcaacttcaag
ggcaacggcggcttcaagaaggagttccgccggcacgacggcgagcgttcctccgctgac
cgcggcggccgctcctacagcgagcgtacgtccggtagctacggtgaccgtgaccgcggc
cagtccggcggctcccgtttcggcggccatggtgacggcgcccgcaagccccgcggcggc
ggcgaaggcggccaccgcgatttcaaccgcaagggcaagtggtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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