KEGG   Actinotignum schaalii: FB03_08910
Entry
FB03_08910        CDS       T03214                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
asg  Actinotignum schaalii
Pathway
asg03030  DNA replication
asg03410  Base excision repair
asg03420  Nucleotide excision repair
asg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:asg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FB03_08910
   03410 Base excision repair
    FB03_08910
   03420 Nucleotide excision repair
    FB03_08910
   03430 Mismatch repair
    FB03_08910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:asg03032]
    FB03_08910
   03400 DNA repair and recombination proteins [BR:asg03400]
    FB03_08910
Enzymes [BR:asg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FB03_08910
DNA replication proteins [BR:asg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FB03_08910
DNA repair and recombination proteins [BR:asg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FB03_08910
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FB03_08910
   MMR (mismatch excision repair)
    DNA ligase
     FB03_08910
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FB03_08910
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH BRCT_2
Other DBs
NCBI-ProteinID: AIE83329
UniProt: A0A068NP24
Position
2093016..2095598
AA seq 860 aa
MSIDEARRRWNEIAPTLTRAQIAYHSGADPLMTDDHYDRLIHELRDLEARYPELAAPDSP
SRAVGAPVQNDGAATLAAGALADKGAEPEHGAGAELGAEPTLGGVPVPDAQPFAPVRHRE
RLYSLQDVFSLEDLRAWYAALPGVAGESGTAVTAEAKIDGLAINLRYDNGALTVAATRGD
GVTGEDVTRNIATIAAIPQRLRGSDIPDVMEVRGEVFFPLADFAQFNAEQRQRREAAERE
RAAAEQIGDTAAVREANRIIRSCREFANPRNAAAGSLRQKDPAVTASRPLSFIAHGIGAL
AGVPASLAEALSTQAGVYEAFARWGLPISPYTKLVSNWEDIEAFVADLATHRYDLIHGID
GAVLKVNNRAAQGGLGYTSRVPRWAIAYKYPPEEVETTLLDIQVNVGRTGRATPYAIMEP
VLVDGSVVTQATLHNREEVARKGVRIGDVVIVRKAGDVIPEVVGPVLLERDGTEREWVMP
RACPSCGATLAPAQEGDVDMRCPNAQSCPAQLAERVVHIGSRGALDVEALGEETALWLTN
PDARRREALIALASGHRLEIEGADGRKKTLRLAREAARDLGIVDGDGAILDSEVIIPPAV
ARSLGVPEPQEPVLHSEAGLFAVQAADVATTWVWKEIRNAGQPTGDYRYVRAAWTKPTWG
SSAGQRVITKESEPGKALLTMLTELEKARGKELWRKLVALSIRHVGPTAARALAAAFPDL
AQLRAASVEELSAVDGVGEIIARSFKEWFEVPWHLDIIERWEAAGVVFADDTAAAEQVPQ
TLAGMTIVATGSLEGYTRDSVKEAILAHGGKAAGSVSKKTTAVVVGENAGSKAAKAEELG
IPRLSEAEFTELLRTGQLPA
NT seq 2583 nt   +upstreamnt  +downstreamnt
atgagcattgacgaggcccgccgccgttggaatgagattgcccccacgctaacccgcgcg
cagatcgcctaccattccggggccgatccgctcatgacggatgaccactacgaccgcctc
attcacgagctgcgcgatctggaagcacgctacccggagctcgcggcaccggattccccc
agccgcgccgtcggggcaccggtgcagaacgacggcgcagccaccctggctgcgggtgcc
ctggcggataaaggtgctgaaccggagcacggcgccggagcggagcttggcgccgaacct
acgcttggcggtgtgcctgtgcccgatgctcaacccttcgcgccggtacggcaccgcgaa
cgcctctactccctccaggacgtcttttcgctcgaggatctgcgcgcctggtacgccgcg
ctcccgggagtagctggggaatccggcaccgccgtcaccgcggaagcaaaaatcgacggc
ctcgcgatcaacctgcgctacgacaacggcgcgctcaccgtggccgccacccgcggggac
ggcgtgaccggggaagatgtcacccgcaatatcgccaccatcgccgccattccgcagcgc
ctgcgcggcagcgatattccggacgttatggaagtacgcggggaagtattcttccccctc
gccgacttcgcccaattcaacgccgaacagcgccagcgccgcgaagcagccgaacgcgag
cgcgcggccgcggaacagatcggggataccgcagcggtgcgcgaagccaaccgcatcatc
cgctcctgccgcgaattcgccaacccgcgtaatgccgcggccggttcgctgcgtcaaaaa
gacccggccgttaccgcctcccgcccgctctcctttattgcccacggcatcggggcgctc
gcgggcgtgccggcctccctggccgaagcactctccacccaggccggcgtctacgaagca
ttcgcacgctggggcctgcccatttccccctacaccaaactggtctctaactgggaggat
atcgaggctttcgtggcagacctggccacccaccgctacgatctcatccacggaattgac
ggcgccgtcctcaaagtcaataaccgcgcggcgcagggcgggctcggttacacttctcgc
gtcccgcgctgggccatcgcctataaatacccgcccgaagaagtggaaaccaccctcctg
gatatccaggtcaatgtgggccgcaccgggcgcgccaccccctacgccattatggaaccc
gtgctcgtagacggctcggtcgttacccaagccaccctccacaaccgtgaagaagtagcc
cgcaaaggcgtgcgcatcggcgacgtcgtgatcgtgcgcaaagccggggatgttatcccc
gaagtggtcggcccggtcctcctcgagcgcgacggtaccgaacgcgaatgggtcatgccg
cgcgcctgcccctcctgcggggccacactcgcccccgcccaggaaggtgatgtggatatg
cgctgccccaatgcgcaatcctgccccgcccaactggccgaacgcgtggtccatatcggc
tcacgcggggcactggacgtggaagccctcggcgaagaaaccgccctctggctcaccaac
ccggacgcccggcgccgcgaagcactcatcgcgctcgccagcggccaccgtctagaaatc
gaaggtgcggacgggcgcaaaaaaaccctgcgcctcgcgcgcgaagcggcacgcgacctg
ggcattgtggacggcgacggcgccatcctcgactccgaggtgattatcccgcccgcagtg
gctcgcagcctgggcgttcccgaacctcaagaaccggtgctccacagcgaagccggactt
ttcgcggtacaagccgcggacgtagccaccacctgggtgtggaaagaaatccgaaacgcc
ggccaacccaccggcgactaccgctacgtgcgcgccgcctggactaaacccacgtgggga
agcagcgccggccagcgcgtcatcaccaaagaaagcgaacccggcaaagccctcctcacc
atgctcaccgagctcgaaaaagcccgcggcaaagaactttggcgcaaactcgtggccctc
tccatccggcacgtcggccccaccgcggcccgcgcgctcgcggcggcgttcccggatctg
gcgcagctgcgcgccgcttccgtggaagaactctccgcggttgacggcgtgggggagatt
atcgcccgctcctttaaagaatggttcgaggtgccctggcatctggacattattgaacgg
tgggaagccgccggggtagttttcgccgatgataccgcggccgcggagcaggtcccccaa
accctggcgggcatgaccattgtggccaccggctccctggaaggctacacccgcgattcg
gtcaaggaagcgatcctcgcgcacggcgggaaagcggccggttcggtttccaagaaaacc
accgcggtggtggtgggggagaatgccgggtcgaaggccgccaaggccgaagaactcggt
attccgcgcctgagcgaagcggaattcaccgagctgctgcgcaccggccagctgcccgca
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (40)   

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