KEGG   Alistipes shahii: AL1_05140
Entry
AL1_05140         CDS       T02578                                 
Name
(GenBank) DNA polymerase III, beta subunit
  KO
K02338  DNA polymerase III subunit beta [EC:2.7.7.7]
Organism
ash  Alistipes shahii
Pathway
ash03030  DNA replication
ash03430  Mismatch repair
ash03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ash00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AL1_05140
   03430 Mismatch repair
    AL1_05140
   03440 Homologous recombination
    AL1_05140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ash03032]
    AL1_05140
   03400 DNA repair and recombination proteins [BR:ash03400]
    AL1_05140
Enzymes [BR:ash01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AL1_05140
DNA replication proteins [BR:ash03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     AL1_05140
DNA repair and recombination proteins [BR:ash03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     AL1_05140
SSDB
Motif
Pfam: DNA_pol3_beta DNA_pol3_beta_2 DNA_pol3_beta_3
Other DBs
NCBI-ProteinID: CBK63151
UniProt: D4IJN9
Position
585892..587016
AA seq 374 aa
MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLLELNGNTLQVTTSDLETTLVGQIEVD
SVESEGTIAAPAKLMLDSLKEFPELPLTIEVNDKNWEIKINWKSGSLSIPGASAVSYPAV
PQLNAEKKELRLDVDTLVNGINKTIFATADDELRPVMNGIYINLAPDALTFVGTDAHKLV
KYEAETENEVTASFILPKKPANLLKSVLLKEDDAIEMAFDSKNALFKLKSHTLVCRLIEG
NYPNYNAVIPSNNPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRITLTAQDIDF
SVSANETISCSYDGQPISIGFKSTFLVEILSNMDTPTVVVELADSTRAGVFKPVYDDKQP
SATLMLLMPMMINA
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgaaattttccgtatcaagctcggccctgctttcgcttctggctaccaccggcaaggtc
atcagcaataagaacacgctgcccatcctggactacttcctcttggaactcaacggcaac
acgctgcaagtcaccacgtcggaccttgagacgacgctcgtcgggcagatcgaggtggac
agcgtcgagagcgaaggtacgatcgccgcgccggccaaactgatgctcgactcgctgaag
gagttccccgaactgccgctgaccatcgaggtcaacgacaagaactgggagatcaagatc
aactggaagagcggatcgctctcgattcccggagccagcgccgtcagctatcccgccgtg
ccgcagctgaacgccgagaaaaaggagctgcgcctcgacgtcgacaccctcgtgaacggc
atcaacaagacgattttcgccacggcggacgacgaactgcgccccgtgatgaacggcatc
tatatcaatctggcgcccgacgcgctgacgttcgtgggaaccgatgcgcacaaactcgtg
aagtacgaggccgagaccgaaaacgaggtgacggcgtcgttcatcctcccgaagaagccc
gccaacctgctcaagtcggtgctgctgaaggaggacgacgcgatcgaaatggcgttcgat
tcgaagaacgccctgttcaaactcaagagccacacgctcgtctgccgcctgatcgagggc
aactacccgaactacaacgccgtgattccgtccaacaaccccaacaaggtgctggtggac
cgcatcgagctggtcaacggcatcaagcgcgtggccgtctgctcgaaccccacgacgaac
ctgatccgcatggacatcgccgacaaccggatcaccctcacggcgcaggacatcgacttc
tcggtgtcggccaacgagacgatctcgtgcagctacgacgggcagcccatttcgatcggc
ttcaagtcgacgttcctcgtcgagatcctctcgaacatggataccccgacggtggtggtg
gaactggccgactcgacccgcgccggcgtcttcaaacccgtttacgacgacaagcagccg
agcgcgacgctcatgctgctgatgccgatgatgatcaacgcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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