KEGG   Alistipes shahii: AL1_16230
Entry
AL1_16230         CDS       T02578                                 
Name
(GenBank) exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ash  Alistipes shahii
Pathway
ash03410  Base excision repair
ash03430  Mismatch repair
ash03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ash00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AL1_16230
   03430 Mismatch repair
    AL1_16230
   03440 Homologous recombination
    AL1_16230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ash03400]
    AL1_16230
DNA repair and recombination proteins [BR:ash03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     AL1_16230
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     AL1_16230
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AL1_16230
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1
Other DBs
NCBI-ProteinID: CBK64023
UniProt: D4IM61
Position
complement(1857408..1859117)
AA seq 569 aa
MLAAALRISPVLANLLVQRGIDTVEKAEKFFKPSLADLHDPFLMKDMEKAVERVEQAVAN
QEKIMVYGDYDVDGCTAVALVYKFLRQIGHKNLMFYIPDRYTEGYGISIKGIDLAARKGV
GLIIALDCGIKATEKVVYAKTKGVDFIICDHHLPAEEIPKAVAVLDPKRVDCSYPFDELS
GCGVGFKLVQAYAQKNRMPFEQILPLLDLLVVSIASDIVPLVGENRILAYFGLKNLNREP
SKGLLSIIKICGLDKHNITIDDIVFKIGPRINAAGRMRMDENDENASPSGGHAAVELLIE
GNESIAEEFGSVIDAYNQDRKSIDRSVTQEAHDYIEGNPEMKALKSTVIYNPRWMKGIVG
IVASRLIETYYRPTVVLTMSNGFVTGSARSVPGFDLYQAVESCSDLLENFGGHMYAAGLT
MRPENVGEFTRRFNAYVEENIDPQMLVPQVDIDSELLFSDITPAFRKDLNRFQPFGPGNT
APVFATCGVSNHGDAKLVGMECEHLRMDLMQRQKPNTKIQAIAFQQPTHYEWVRSGRPID
VCYQIVENHYRGTVTTQLRIKDIKPVLNR
NT seq 1710 nt   +upstreamnt  +downstreamnt
atgctggctgccgctctgcggatctcgccagtactggccaatctgctcgtacagagaggc
atagacactgtagaaaaggcggagaagttctttaaaccgagcctcgccgacctgcacgat
ccgttcctgatgaaggacatggagaaggcggtcgagcgggtcgaacaggccgttgcgaac
caggagaagatcatggtttacggcgactacgacgtggacggctgtacggccgtcgcgctg
gtttacaagttcctgcgccagatcgggcacaaaaacctgatgttctacatccccgaccgt
tataccgaaggatacggtatttcgatcaaaggtatcgacctcgccgcccgcaagggcgtg
gggcttatcatcgccctggactgcggcatcaaagccacggaaaaggttgtctatgcgaag
acgaaaggcgtggatttcatcatctgcgaccaccacctcccggccgaggagattcccaag
gccgtagccgttctggaccccaagcgggtcgactgctcctacccgttcgacgaactgtcg
ggctgcggcgtgggattcaaactcgtgcaggcctatgcgcagaaaaaccgcatgcctttc
gagcagatcctgcccctgctggacctgctggtcgtgtcgatcgcctcggacatcgtgccg
ctggtcggcgagaaccggattctggcctatttcggcctgaagaacctcaaccgcgagccg
tcgaaaggtctgctgtcgatcatcaagatctgcgggctggacaaacacaatatcaccatc
gacgacatcgtcttcaagatcgggccgcgcatcaacgccgccggccggatgcgaatggac
gagaacgacgaaaacgcctcgccttcgggcgggcacgccgccgtggagctgctgatcgag
ggcaacgagtcgatcgccgaggagttcggcagcgtgatcgacgcctacaaccaggaccgc
aagtcgatcgaccgctccgtcacgcaggaagcgcacgactatatcgagggcaatcccgaa
atgaaggccctcaagagcaccgtgatctacaatccccgctggatgaagggcatcgtgggc
atcgtcgcgtcgcgtctcatcgagacctactaccgcccgacggtggtgctgacgatgagc
aacggattcgtgaccggatcggcgcgttcggttcccggattcgacctttaccaggccgtc
gagtcgtgctcggacctgttggaaaacttcggcggacacatgtacgccgcagggctgacg
atgcgtccggaaaacgtcggcgagttcacgcggcggttcaacgcatacgtggaggagaac
atcgacccgcagatgctcgtcccgcaggtggacatcgacagcgaactgctcttctcggac
atcacgccggctttccgcaaggacctcaaccgctttcagcccttcgggccgggcaacacg
gcgccggtcttcgccacctgcggcgtgagcaaccacggcgacgccaagctcgtcggcatg
gagtgcgagcacctgcgcatggacctgatgcagcggcagaagcccaacaccaagatccag
gccatcgccttccagcagcccacgcattacgaatgggtgcgctcgggacgcccgatcgac
gtctgctaccagatcgtcgaaaaccactaccggggaactgtgaccacccagctccggatc
aaggacatcaaacccgttctgaacaggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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