KEGG   Alligator sinensis (Chinese alligator): 102372907
Entry
102372907         CDS       T02922                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
asn  Alligator sinensis (Chinese alligator)
Pathway
asn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:asn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102372907 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:asn03041]
    102372907 (SNRNP40)
Spliceosome [BR:asn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    102372907 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    102372907 (SNRNP40)
SSDB
Motif
Pfam: WD40 NBCH_WD40 ANAPC4_WD40 eIF2A Cytochrom_D1 WDR54 WD40_like PROPPIN PD40
Other DBs
NCBI-GeneID: 102372907
NCBI-ProteinID: XP_006030904
UniProt: A0A1U7S857
Position
Unknown
AA seq 351 aa
MLDKFLDTKHPGGRFRSRDHDRAAEAQGAGAGAAPGALLQAGPPRCSSLQAPIMLLSGHE
GEVYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFS
ASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA
VQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSE
GSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSAD
RFVYVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgttggacaagtttttggacacaaagcatcctggggggcgatttaggagccgcgaccat
gatcgagcagcagaagcgcaaggcgccggggccggggcggccccgggggcgctgctgcag
gcgggtcctcccaggtgctcctcgctgcaggctcccattatgctgctttcaggacacgaa
ggggaagtttactgctgcaagtttcaccctaatggaaacaccttggcctccgcaggattt
gacaggctcatcttgctgtggaatgtttatggagattgtgataactatgctactctgaaa
gggcacagtggcgcagttatggagttgcactataatactgatggcagcatgctcttctca
gcatccacagataaaacagtagctgtatgggatagtgagacgggagaaagagtgaaaagg
ctgaaggggcatacatcatttgttaactcctgttacccagccaggaggggaccccagctt
gtctgcacaggcagtgatgatgggacagtaaagctgtgggatatcaggaaaaaagctgct
gtccagacatttcaaaatacttatcaggtattggcagtaaccttcaatgacaccagtgac
caaattatctcaggaggcatagacaatgatatcaaggtatgggatcttcgccagaacaaa
ctaacatacacaatgagagggcacgcagactcagtaactggcctcagtctcagttcagaa
ggctcttacttgctttccaatgcaatggacaacacagttcgtatctgggatgtgcgtcca
tttgcccctaaagagaggtgcgtaaagatatttcaggggaacgtacataactttgagaag
aatcttctgagatgttcatggtcaccagatgggagtaaaattgcaggcgggtcagcagac
cggtttgtttatgtgtgggacacaacctccaggagaattctctacaaattgccaggccat
gctggctcagtaaatgaggtggctttccatccagaggaaccaattatactctctgcctcc
agtgacaaaagactgtacatgggagagatccagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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