KEGG   Agrobacterium tumefaciens Ach5: Ach5_11870
Entry
Ach5_11870        CDS       T03816                                 
Name
(GenBank) beta-lactamase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
atf  Agrobacterium tumefaciens Ach5
Pathway
atf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ach5_11870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atf03019]
    Ach5_11870
Messenger RNA biogenesis [BR:atf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Ach5_11870
SSDB
Motif
Pfam: Lactamase_B_2 RNase_J_C Lactamase_B RMMBL Regulator_TrmB
Other DBs
NCBI-ProteinID: AKC06963
UniProt: A0AA86FUC2
Position
circular:1217879..1219546
AA seq 555 aa
MTKQDELVFLPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGLDLPGVDLVLPDIS
YIAEQKKNLKGIIITHAHEDHYGALNDLWPGLNVPVYASGFTAGMLEAKRAYEGSRAEIP
ITPFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGNVIHTGDWKIDEAPSLGPLTD
EARFRAIGEEGVLALMCDSTNSLRDGVSPSEHEVSEGLRQIIENAEGRVAITTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRNKVVVILT
GSQGEPRAALAKLSRDEMRNVALAAGDTVVFSSRAIPGNEKAIIEIKNGLIEQGIHIVTD
NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
ILRLAPGPAEVINDAPHGRVFKDGNLIGDLDEMGISNRRKLSFAGHVSVNVLLDSRYDFL
GDPDVVPFGLPEFDDEGEDMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
AWGKKPIVTVFVTKV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgactaaacaggacgaactggtatttctgccgcttggcggcgtcggtgaaatcggcatg
aatctggcgctgtacggctacggtccggaaagcaagcgccaatggatcatggtggattgc
ggcgttacctttgccggcctcgatctgcctggtgtcgatctggttctccccgatatcagc
tatatcgccgagcagaagaagaacctcaaaggcatcatcatcacccacgcccatgaggat
cactacggcgcgctgaacgatctgtggccgggcctcaacgtgcccgtctatgcctcgggt
ttcaccgccggaatgctggaggcaaagcgcgcctacgagggcagtcgtgccgaaattcca
atcaccccgttcaaggcgggtgatcgcatcaatgtcggcccgttcgaaatcgaggccgtc
ggcgtcaaccattcgatccccgaaccgatgtcgctggtcatccgcacgccgcttggcaat
gtcatccacacgggcgactggaagattgacgaggcgccgtctctcggtccgttgacggat
gaggcgcgtttccgcgccatcggcgaggagggcgtgctggcgttgatgtgcgacagcacc
aactcgctgcgcgacggcgtatcgccttcggagcacgaagtatctgaggggctgcgccag
atcattgaaaatgccgagggtcgcgtggccatcaccaccttctcctccaatgtcggccgt
atccgctccatcgcgcaggctgcggaagctgccggacgcgaagtgctgctgctcggctcg
tcgctgaagcgcgtcgtcaacgtttcgcaggatctcggcatcatggaaggtatcaagccg
ttcctggctgaagacgaatacggctatattccgcgcaacaaggtggtcgtcattctcacc
ggttcgcagggcgagccgcgggcagcccttgccaagctttcgcgcgatgagatgcgtaat
gtggcgctggctgccggtgatacggtggtattttcctcgcgcgccattccgggcaacgaa
aaggcgatcatcgagatcaagaacggcctgatagagcagggcatccatatcgttaccgac
aatgaggctttggtgcatgtctccggccatccccgccgtaacgaacttctgaggatgtac
gaatggaccaagccgcaaatcctggtgccggtgcatggcgaggcggcgcatctggtcgcg
cagaaggaactggccgaacaggccggcatttcgcaggtgccgaaggttcgtaacggcaac
attctgcgtctggcgcctggtcctgcggaagtcatcaacgacgcaccgcacggccgcgtc
ttcaaggacggcaacctcatcggtgacctcgacgagatggggatcagcaaccgccgcaag
ctttccttcgccggccatgtctccgtcaatgtgctgctggacagccgctacgacttcctc
ggagatcccgatgtcgtaccttttggcctgccggaattcgatgatgagggcgaggacatg
gaagatacgctctatgacgccgtactcggcgccgtggaaagcatcccccgtgcccgccgc
aaggaccttgcgctgctgcgcgagtcagtgcgccgcgccgtacgcgccgctgccaatcag
gcatggggcaagaagccgatcgtgacggttttcgtcaccaaggtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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